Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J01
(231 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 83 4e-18
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 49 7e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 45 2e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 4e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 2e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 36 5e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 33 0.007
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 27 0.25
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 1.8
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 24 2.3
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 24 2.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 2.3
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 23 4.1
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 23 4.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 23 4.1
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 23 4.1
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 23 5.4
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 23 5.4
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 22 9.5
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 22 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 83.4 bits (197), Expect = 4e-18
Identities = 36/41 (87%), Positives = 39/41 (95%)
Frame = +2
Query: 107 DEEVAALVVDNGSGMCKAGFAGDDAPRAVCPSIVGRPRHQG 229
+EE+AALV+DNGSGMCKAGFAGDDAPRAV PSIVGRPRH G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 49.2 bits (112), Expect = 7e-08
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVCPSIVGRPRHQ 226
+ +DNGSG KAGFAGDD P+ + P+ VGR +H+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 44.8 bits (101), Expect = 2e-06
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +2
Query: 113 EVAALVVDNGSGMCKAGFAGDDAPRAVCPSIVGRP 217
E A +V+DNG+G K G+A D+ PR PSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 39.9 bits (89), Expect = 4e-05
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVCPSIVG 211
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 2e-04
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVCPSIV 208
+++DNG+G K G+AG+DAP V P+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.3 bits (80), Expect = 5e-04
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVCPSIVG 211
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 32.7 bits (71), Expect = 0.007
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVCPSIVGRPR 220
LV+DNGS +AG+ G+ P+ V ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 27.5 bits (58), Expect = 0.25
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 117 LPRWS*TMGPECAKPVSRETTLPAPYVPRSW 209
L W T P+C P +RET +V SW
Sbjct: 481 LETWMKTTCPKCHGPATRETDTMDTFVDSSW 511
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAG 172
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 24.2 bits (50), Expect = 2.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 183 PAPYVPRSWGDLVT 224
P PYVPR W D ++
Sbjct: 100 PFPYVPRVWVDYIS 113
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 2.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 157 FAHSGPIVYDQRGNFLV 107
+ HS PI+YD+ G+ +V
Sbjct: 162 YTHSQPILYDRDGSLIV 178
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 2.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 213 RPTIEGHTARGASSPAKPALHIPDPLSTTNAATS 112
RP+ +G A G A P+ IP PL +N +S
Sbjct: 950 RPSNDGRKASGPRPAAPPS--IPPPLPVSNILSS 981
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 207 TIEGHTARGASSPAKPALHIPDPLSTT 127
T EG A+ P P LHIP P TT
Sbjct: 31 TFEG--AQPQWEPPIPGLHIPPPPGTT 55
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 156 LHIPDPLSTTNAATSSSHI 100
+H PD LS N++ S +H+
Sbjct: 369 IHYPDDLSYFNSSRSKAHV 387
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 174 SPAKPALHIPDPLSTTNAATSSS 106
+P P PL+TTN TS+S
Sbjct: 410 TPTVPPTSSSTPLTTTNCTTSTS 432
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 208 HDRGTYGAGSVVSRETGFAHSGPIVYDQRGN 116
+ RG Y GSV RET G V R N
Sbjct: 898 YSRGGYSRGSVPPRETLAPSKGAYVPPSRRN 928
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 205 DRGTY-GAGSVVSRETGFAHSGPIVYDQRGNFLVAH 101
D TY GS+ R+ G ++ +V+D G + H
Sbjct: 117 DTKTYLFGGSIPERKDGKLYNTAMVFDPSGKLIAVH 152
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -3
Query: 160 GFAHSG-PIVYDQRGNFLVAH 101
G+ SG P+V D R N+L+ +
Sbjct: 649 GYDFSGYPVVLDSRSNYLIGY 669
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 22.2 bits (45), Expect = 9.5
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 216 GRPTIEGHTARGASSPAKPALHIPDPLST-TNAATSSS 106
GRP+ G RG A + D LST TN A+S +
Sbjct: 431 GRPSRFGGRVRGNPLTMNKAGSVSDLLSTSTNMASSDA 468
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 141 PLSTTNAATSSSH 103
P+ TTN TS+SH
Sbjct: 264 PIGTTNTYTSASH 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 846,832
Number of Sequences: 5004
Number of extensions: 12924
Number of successful extensions: 46
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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