Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I24
(186 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 113 7e-25
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 111 3e-24
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 109 1e-23
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 102 1e-21
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 101 2e-21
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 93 1e-18
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 90 8e-18
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 88 4e-17
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 85 3e-16
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 80 8e-15
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 68 5e-11
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 61 4e-09
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 61 5e-09
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 55 3e-07
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 51 4e-06
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 45 4e-04
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 45 4e-04
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 44 7e-04
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 44 9e-04
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 42 0.002
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 42 0.003
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 40 0.008
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 40 0.014
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 40 0.014
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 37 0.076
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 37 0.10
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 35 0.40
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 33 1.2
UniRef50_Q95108 Cluster: Thioredoxin, mitochondrial precursor; n... 32 2.2
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 31 5.0
UniRef50_UPI0000ECB7B2 Cluster: UPI0000ECB7B2 related cluster; n... 31 6.6
UniRef50_A5DRQ3 Cluster: Putative uncharacterized protein; n=1; ... 30 8.7
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 30 8.7
UniRef50_A7RW30 Cluster: Predicted protein; n=2; Nematostella ve... 27 9.1
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 113 bits (272), Expect = 7e-25
Identities = 51/55 (92%), Positives = 53/55 (96%)
Frame = +3
Query: 21 MARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYA
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYA 55
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 111 bits (267), Expect = 3e-24
Identities = 49/55 (89%), Positives = 52/55 (94%)
Frame = +3
Query: 21 MARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYA
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYA 55
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 109 bits (262), Expect = 1e-23
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = +3
Query: 24 ARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYA
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYA 55
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 102 bits (245), Expect = 1e-21
Identities = 44/55 (80%), Positives = 50/55 (90%)
Frame = +3
Query: 21 MARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
MARG KKHLKRL+APK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYA
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYA 55
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 101 bits (243), Expect = 2e-21
Identities = 44/55 (80%), Positives = 48/55 (87%)
Frame = +3
Query: 21 MARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYA
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYA 55
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 93.1 bits (221), Expect = 1e-18
Identities = 38/55 (69%), Positives = 46/55 (83%)
Frame = +3
Query: 21 MARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
MARGP+ HLKRL+AP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YA
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYA 55
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 90.2 bits (214), Expect = 8e-18
Identities = 39/50 (78%), Positives = 43/50 (86%)
Frame = +3
Query: 36 KKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYA
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYA 52
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 87.8 bits (208), Expect = 4e-17
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = +3
Query: 21 MARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
+A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYA
Sbjct: 12 VAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYA 65
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 85.0 bits (201), Expect = 3e-16
Identities = 35/55 (63%), Positives = 47/55 (85%)
Frame = +3
Query: 21 MARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
M+RG KKH KRL+APK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYS 55
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 80.2 bits (189), Expect = 8e-15
Identities = 38/59 (64%), Positives = 43/59 (72%)
Frame = +3
Query: 9 VLVNMARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
VL M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYA
Sbjct: 11 VLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYA 69
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 67.7 bits (158), Expect = 5e-11
Identities = 29/55 (52%), Positives = 37/55 (67%)
Frame = +3
Query: 21 MARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYA 55
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 61.3 bits (142), Expect = 4e-09
Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +3
Query: 30 GPKKHLKRLDAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYA 59
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 60.9 bits (141), Expect = 5e-09
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +3
Query: 27 RGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYA 56
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 55.2 bits (127), Expect = 3e-07
Identities = 36/83 (43%), Positives = 45/83 (54%), Gaps = 29/83 (34%)
Frame = +3
Query: 24 ARGPKKHLKRLDAPKAWMLDKLGG-------------------------VYAPRPSTGP- 125
ARGPKKHLKR++APK+WML+KLGG +Y + +T P
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 126 ---HKLRECLPLVIFLRNRLKYA 185
HKLRE LPL + L+ RL YA
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYA 165
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 51.2 bits (117), Expect = 4e-06
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +3
Query: 42 HLKRLDAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYA 51
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 44.8 bits (101), Expect = 4e-04
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 42 HLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYA 50
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 44.8 bits (101), Expect = 4e-04
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 21 MAR-GPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYA 56
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 44.0 bits (99), Expect = 7e-04
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3
Query: 27 RGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
+G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYA 58
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 43.6 bits (98), Expect = 9e-04
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 30 GPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
G +KHLK APK W + + +PS G H + L L + +R+ LK A
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLA 56
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 42.3 bits (95), Expect = 0.002
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 42 HLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLA 52
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 41.9 bits (94), Expect = 0.003
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 42 HLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVA 52
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 40.3 bits (90), Expect = 0.008
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 36 KKHLKRLDAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLA 56
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 39.5 bits (88), Expect = 0.014
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 42 HLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRL 176
H KR+ PK+W + K + GPH + +PL + LR+ L
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDML 48
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 39.5 bits (88), Expect = 0.014
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 42 HLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK 179
H KRL PK+W + + G + GPH LPL + +R+ LK
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLK 48
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 37.1 bits (82), Expect = 0.076
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 48 KRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++A
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFA 49
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 36.7 bits (81), Expect = 0.10
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 42 HLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
H KRL P +W +++ + + GPH +PL+I LR+ L YA
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYA 50
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 34.7 bits (76), Expect = 0.40
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 42 HLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK 179
H+ R +AP + K + R GPHK++E +PL I L+ LK
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLK 48
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 33.1 bits (72), Expect = 1.2
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 39 KHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
K+LKRL AP +W + K + + + GPH LP+ ++LR + A
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLA 50
>UniRef50_Q95108 Cluster: Thioredoxin, mitochondrial precursor;
n=10; Euteleostomi|Rep: Thioredoxin, mitochondrial
precursor - Bos taurus (Bovine)
Length = 166
Score = 32.3 bits (70), Expect = 2.2
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 178 LSRFRRKITSGKHSRSLWGPVEGRGAYTP 92
L RF I SGK S+S W PV R TP
Sbjct: 7 LRRFLTSIISGKPSQSRWAPVASRALQTP 35
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 31.1 bits (67), Expect = 5.0
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 21 MARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLR 167
MA+G KKH KR+ + K G++ + S+GPH + + L+ ++
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIK 49
>UniRef50_UPI0000ECB7B2 Cluster: UPI0000ECB7B2 related cluster; n=1;
Gallus gallus|Rep: UPI0000ECB7B2 UniRef100 entry -
Gallus gallus
Length = 178
Score = 30.7 bits (66), Expect = 6.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 181 YLSRFRRKITSGKHSRSLWGPVEGRGAYTPPSL-SNIHALGASKRFKCFFG 32
YL + +++I+S + + WG ++TPPSL + L A + F C +G
Sbjct: 6 YLEKQQQRISSHWAALAQWGGHRSSESHTPPSLWLKVCTLNALQAFPCVWG 56
>UniRef50_A5DRQ3 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 166
Score = 30.3 bits (65), Expect = 8.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 149 RQAFAQLVGTRRGPRRVHAAQLVQHPC 69
RQ FA + TR+ +VH QLV PC
Sbjct: 33 RQHFAPPLSTRKSKLKVHKLQLVNRPC 59
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 30.3 bits (65), Expect = 8.7
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +3
Query: 75 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK 179
+LDKLG +Y S+ HK+++ + ++I R++L+
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLR 455
>UniRef50_A7RW30 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1072
Score = 26.6 bits (56), Expect(2) = 9.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 105 PRPSTGPHKLRECLPLVIFL 164
P PST PH L+ +PL + +
Sbjct: 842 PHPSTSPHSLQVLIPLQVLI 861
Score = 22.2 bits (45), Expect(2) = 9.1
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 102 APRPSTGPH 128
+P PSTGPH
Sbjct: 829 SPHPSTGPH 837
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,383,437
Number of Sequences: 1657284
Number of extensions: 2806697
Number of successful extensions: 8751
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 8594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8748
length of database: 575,637,011
effective HSP length: 41
effective length of database: 507,688,367
effective search space used: 10153767340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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