Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I24
         (186 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   101   2e-23
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   101   2e-23
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   101   2e-23
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   1.7  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    23   5.3  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    22   9.3  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  101 bits (241), Expect = 2e-23
 Identities = 42/55 (76%), Positives = 47/55 (85%)
 Frame = +3

Query: 21  MARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYA
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYA 55


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  101 bits (241), Expect = 2e-23
 Identities = 42/55 (76%), Positives = 47/55 (85%)
 Frame = +3

Query: 21  MARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYA
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYA 55


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  101 bits (241), Expect = 2e-23
 Identities = 42/55 (76%), Positives = 47/55 (85%)
 Frame = +3

Query: 21  MARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYA
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYA 55


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 178 LSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 80
           L R +R   +   + S+W  +E   A+  PSLS
Sbjct: 597 LLRLKRSNRTAAQTASVWNRIERAAAHDGPSLS 629


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -3

Query: 94  PPSLSNIHALGASKRFKCFFGPRAMLTNTLV 2
           P    N  ALG    FKCF  P     N +V
Sbjct: 402 PQDAFNRVALGLPSNFKCFPNPCMFSINDVV 432


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 70   HGCWTSWAACT 102
            HGC T+WA  T
Sbjct: 1291 HGCLTAWARLT 1301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,297
Number of Sequences: 5004
Number of extensions: 9855
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)