Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I24
(186 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 102 5e-23
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 102 5e-23
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 100 3e-22
01_01_0848 + 6614403-6614768 26 3.7
10_08_0895 + 21390780-21390853,21391945-21392043,21392400-213925... 26 4.9
08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233... 26 4.9
05_05_0267 - 23704249-23704401,23704476-23704780,23704967-237056... 25 6.5
12_02_0903 - 24179533-24180120 25 8.5
09_03_0187 - 13253787-13254509 25 8.5
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 25 8.5
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 102 bits (244), Expect = 5e-23
Identities = 43/55 (78%), Positives = 50/55 (90%)
Frame = +3
Query: 21 MARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
MARG KKHLKRL+APK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYA
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYA 55
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 102 bits (244), Expect = 5e-23
Identities = 43/55 (78%), Positives = 50/55 (90%)
Frame = +3
Query: 21 MARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
MARG KKHLKRL+APK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYA
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYA 55
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 99.5 bits (237), Expect = 3e-22
Identities = 42/54 (77%), Positives = 48/54 (88%)
Frame = +3
Query: 24 ARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 185
ARG KKHLKRL+AP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYA
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYA 71
>01_01_0848 + 6614403-6614768
Length = 121
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 76 CWTSWAACTRRGPRR 120
CW S AA RR PRR
Sbjct: 4 CWASVAAALRRAPRR 18
>10_08_0895 +
21390780-21390853,21391945-21392043,21392400-21392553,
21393759-21393798,21395094-21395138,21395727-21395833
Length = 172
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 130 LWGPVEGRGAYTPPSLSNIHAL-GASKRFKC 41
LWGP R + P S SN+ L G R +C
Sbjct: 24 LWGPKPARLLWVPSSQSNVGLLRGLQYRDRC 54
>08_02_0746 +
20721421-20721649,20722912-20722971,20723318-20723377,
20723458-20723553,20723764-20723871,20724037-20724090,
20724275-20724414,20724499-20724570,20724642-20724692,
20724943-20725017,20725205-20725585,20726372-20727604,
20727679-20727831
Length = 903
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 121 PVEGRGAYTPPSLSNIHALGASKRFKCFFGPRAMLTNTLV 2
PV +G + P S + G + RFK GP+ +TN ++
Sbjct: 506 PVYFKGDFCPFIKSTALSEGTNSRFKNNVGPQYSITNFMI 545
>05_05_0267 -
23704249-23704401,23704476-23704780,23704967-23705674,
23707772-23708114,23708300-23708374,23708625-23708675,
23708747-23708818,23708903-23709042,23709227-23709280,
23709446-23709553,23709769-23709864,23709946-23710005,
23710352-23710411,23711699-23711927
Length = 817
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 121 PVEGRGAYTPPSLSNIHALGASKRFKCFFGPRAMLTNTLV 2
PV +G + P S + G + RFK GP+ +TN ++
Sbjct: 482 PVYFKGDFCPFIKSTALSEGTNSRFKNNVGPQYNITNFMI 521
>12_02_0903 - 24179533-24180120
Length = 195
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 102 APRPSTGPHKLREC 143
AP+PS+ PHK+ C
Sbjct: 61 APKPSSAPHKVFSC 74
>09_03_0187 - 13253787-13254509
Length = 240
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 27 RGPKKHLKRLDAPKAWMLDKLGGVYA 104
R P L+ P +W+L LGG +A
Sbjct: 141 RPPSSGCSDLEPPSSWLLGPLGGGWA 166
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 3 TRVLVNMARGPKKHLKRLDAPKAWMLDKLGGVYAPRPSTGPH 128
TR L ++ G KKH R K W D+ YA + H
Sbjct: 120 TRALGDLT-GIKKHYSRKHGEKKWKCDRCSKKYAVQSDWKAH 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,156,782
Number of Sequences: 37544
Number of extensions: 83284
Number of successful extensions: 311
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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