Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I23
         (211 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0310 - 8842286-8843314                                           27   2.7  
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24...    25   6.3  
10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334     25   8.4  
09_04_0315 + 16600387-16600557,16600652-16600801,16600874-166008...    25   8.4  
02_05_0859 + 32292502-32292979,32293271-32293317,32294134-322942...    25   8.4  

>02_02_0310 - 8842286-8843314
          Length = 342

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 109 SNLHQRNGLRPQHRHHHIPTR 171
           S +H   G R  H HHH+  R
Sbjct: 293 SRMHHHRGCRFHHHHHHLSFR 313


>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
            246893-247240,247882-248721,248786-248832,249470-249596,
            249672-249836,249973-251370,251453-251713,251802-252161
          Length = 1539

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 105  WRSFH*CY*VHRRSIASELL 46
            W SFH C   +R+ I +E+L
Sbjct: 1070 WNSFHECQLAYRKDIQNEIL 1089


>10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334
          Length = 664

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 82  ITLVERSPISNLHQRNGLRPQHRHHHIP 165
           I+L E    S+L Q   + P+  HHH+P
Sbjct: 637 ISLEETFSSSSLLQMISMSPETLHHHLP 664


>09_04_0315 +
           16600387-16600557,16600652-16600801,16600874-16600897,
           16601519-16602694,16603120-16603266,16603477-16603752
          Length = 647

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 67  AAVDLITLVERSPISNLHQRNGLRPQH 147
           A +D+   V   PI+++    GLRP+H
Sbjct: 21  ADIDIANAVSPLPIADIAAELGLRPEH 47


>02_05_0859 +
           32292502-32292979,32293271-32293317,32294134-32294205,
           32294403-32294495
          Length = 229

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 14  C*AGVPCSCGFRSSEAIE 67
           C A  PCSCG  SS+  E
Sbjct: 129 CAAASPCSCGASSSDVSE 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,264,298
Number of Sequences: 37544
Number of extensions: 59882
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)