Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I23
(211 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61949-7|AAB03155.1| 510|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical pr... 26 3.2
AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode poly... 25 5.6
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 25 5.6
AF106581-3|AAO25985.1| 399|Caenorhabditis elegans Nematode poly... 25 5.6
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 25 5.6
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 25 5.6
AY835432-1|AAX37359.1| 467|Caenorhabditis elegans bZIP transcri... 25 9.7
AF098995-3|AAC67483.1| 276|Caenorhabditis elegans F-box b prote... 25 9.7
AF016440-1|ABA54419.1| 467|Caenorhabditis elegans Abnormal ever... 25 9.7
AC093703-2|AAL77187.3| 473|Caenorhabditis elegans Hypothetical ... 25 9.7
>U61949-7|AAB03155.1| 510|Caenorhabditis elegans Hypothetical
protein F49E8.7a protein.
Length = 510
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 110 PIYTNAMVFAHSIGIIISLREIF*FGSRSQRLS 208
P++T++ F +IGI+I +E SRS RLS
Sbjct: 49 PLFTSSGTFEETIGILIQWQEY--LKSRSDRLS 79
>Z67754-2|CAA91752.2| 677|Caenorhabditis elegans Hypothetical
protein C34E11.2 protein.
Length = 677
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 109 SNLHQRNGLRPQHRHHHIPTRDLLVWLKI 195
+N H+ N QH +H T L+WL I
Sbjct: 647 TNQHETNNSHQQHNAYHHTTTANLLWLVI 675
>AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (51.7 kD) protein.
Length = 444
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 118 HQRNGLRPQHRHHHIPTRDLLV 183
H+ +G H HHHI R L V
Sbjct: 148 HEGHGDHSGHNHHHIKRRHLAV 169
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 118 HQRNGLRPQHRHHHIPTRDLLV 183
H+ +G H HHHI R L V
Sbjct: 1144 HEGHGDHSGHNHHHIKRRHLAV 1165
>AF106581-3|AAO25985.1| 399|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform b
protein.
Length = 399
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 118 HQRNGLRPQHRHHHIPTRDLLV 183
H+ +G H HHHI R L V
Sbjct: 103 HEGHGDHSGHNHHHIKRRHLAV 124
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c
protein.
Length = 1198
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 118 HQRNGLRPQHRHHHIPTRDLLV 183
H+ +G H HHHI R L V
Sbjct: 902 HEGHGDHSGHNHHHIKRRHLAV 923
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 118 HQRNGLRPQHRHHHIPTRDLLV 183
H+ +G H HHHI R L V
Sbjct: 1144 HEGHGDHSGHNHHHIKRRHLAV 1165
>AY835432-1|AAX37359.1| 467|Caenorhabditis elegans bZIP
transcription factor FOS-1a protein.
Length = 467
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 97 RSPISNLHQRNGLRPQHRHHH 159
R+PI+ H + + P +HHH
Sbjct: 30 RNPINQAHPTSVIVPPRQHHH 50
>AF098995-3|AAC67483.1| 276|Caenorhabditis elegans F-box b protein
protein 17 protein.
Length = 276
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +2
Query: 131 VFAHSIGIIISLREIF*F 184
VF+H+ GI++SL+ +F F
Sbjct: 113 VFSHNNGIVLSLKPLFSF 130
>AF016440-1|ABA54419.1| 467|Caenorhabditis elegans Abnormal
eversion of vulva protein5, isoform b protein.
Length = 467
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 97 RSPISNLHQRNGLRPQHRHHH 159
R+PI+ H + + P +HHH
Sbjct: 30 RNPINQAHPTSVIVPPRQHHH 50
>AC093703-2|AAL77187.3| 473|Caenorhabditis elegans Hypothetical
protein Y20F4.2 protein.
Length = 473
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1
Query: 115 LHQRNGLRPQHRHHH 159
+H G+ P H HHH
Sbjct: 183 IHNMGGMVPMHPHHH 197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,437,261
Number of Sequences: 27780
Number of extensions: 46244
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -