Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I23
         (211 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   0.91 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   2.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   8.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   8.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 0.91
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 139 PQHRHHHIPTRDL 177
           P H HHH  T+ L
Sbjct: 349 PPHHHHHHQTQSL 361


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 2.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 100 SPISNLHQRNGLRPQH 147
           SP S +HQ   L  QH
Sbjct: 66  SPASGIHQMQQLLQQH 81


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 121 QRNGLRPQHRHHHIPTRDLLV 183
           +RN L  QH H H  T  +++
Sbjct: 185 RRNVLNKQHVHFHDYTGSVVI 205


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 76  DLITLVERSPISNLHQRNGLRPQHRHHHIPTRDLLV 183
           DL+ +V      + +    L+   + H +PT +LLV
Sbjct: 160 DLVRVVSWLQEPSFYIYPSLQGDGKFHLLPTGELLV 195


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 76  DLITLVERSPISNLHQRNGLRPQHRHHHIPTRDLLV 183
           DL+ +V      + +    L+   + H +PT +LLV
Sbjct: 160 DLVRVVSWLQEPSFYIYPSLQGDGKFHLLPTGELLV 195


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 139 PQHRHHHIPTRD 174
           P    HH PTR+
Sbjct: 791 PAKAMHHYPTRE 802


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,656
Number of Sequences: 438
Number of extensions: 644
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)