Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I22
         (183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    27   0.43 
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    24   3.1  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    24   3.1  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    24   3.1  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    24   3.1  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    23   5.3  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    23   5.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    23   7.0  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    23   7.0  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    22   9.3  

>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = -2

Query: 137 GNYNCAAVVVRSVPDP--HP---LVHPIDWVEVHGARHHLCVGLLHHH 9
           GNY    + +R+      HP   LVHP D   + G+   +CV   H H
Sbjct: 235 GNYGYTELHIRAAQQMFGHPRFLLVHPEDIYCISGSSDWVCVSTQHFH 282


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 173 DRLRDVRRGSYDGNYNCAAVVVRSVPDP 90
           D++  V  G+ +GN NCA + + +   P
Sbjct: 141 DQVYQVYFGAGNGNPNCAGIAIEAFVSP 168


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 63  PINGVHKGMRVRNRAHHHRSA 125
           PI  +HKG   RNR  + R A
Sbjct: 5   PIRTLHKGKAARNRTPYDRIA 25


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 104 SVPDPHPLVHPIDWVEVHGARHHLCVGLLH 15
           SV D +  ++ +DW     +   L VG LH
Sbjct: 643 SVFDDYGPINDLDWTSTPNSHSILAVGFLH 672


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 173 DRLRDVRRGSYDGNYNCAAVVVRSVPDP 90
           D++  V  G+ +GN NCA + + +   P
Sbjct: 141 DQVYQVYFGAGNGNPNCAGIAIEAFVSP 168


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 70  LIGWRSTAPDTTSAWG 23
           LI W STAP   + WG
Sbjct: 928 LIIWLSTAPGLDAQWG 943


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 71  IDWVEVHGARHHLCVGLLH 15
           +DW+  + A   LC+G LH
Sbjct: 687 LDWIRTYIAETVLCLGDLH 705


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 146  SYDGNYNCAAVVVRSVPDPHPLV 78
            +YD NY   A V ++  D  P++
Sbjct: 1270 TYDANYTTGAYVFKATGDLDPVI 1292


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 30  AEVVSGAVDLHPINGVHKGMRVRN 101
           A+++SG   LH    VH+ +++ N
Sbjct: 605 AQLISGVAYLHSRGVVHRDLKLEN 628


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 149 GSYDGNYNCAAVVVRSVPDPHPLVHPIDWVEVHGARH 39
           GS + N    AV+  +  D H    P DWV V   RH
Sbjct: 264 GSRETNCLYYAVIYLAPGDYHRFHSPTDWV-VERRRH 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,779
Number of Sequences: 5004
Number of extensions: 8327
Number of successful extensions: 31
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)