Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I22
(183 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0081 + 14710478-14710822 27 1.6
01_07_0139 - 41385823-41386656 27 1.6
06_01_0071 + 592662-592973 26 3.7
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288... 25 6.5
08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527 25 6.5
04_04_1158 - 31342934-31343272,31343508-31343658,31343745-313439... 25 6.5
05_04_0154 - 18549806-18550161,18550271-18550907 25 8.6
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594 25 8.6
05_01_0240 - 1791138-1791470 25 8.6
03_01_0037 - 335646-335855,336480-336686,336962-337129,337377-33... 25 8.6
02_01_0069 + 491452-492594 25 8.6
>10_08_0081 + 14710478-14710822
Length = 114
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3
Query: 61 WRSTAPDTTSAWGSFT 14
W S AP TT+AWG+FT
Sbjct: 44 WSSNAP-TTNAWGAFT 58
>01_07_0139 - 41385823-41386656
Length = 277
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 33 EVVSGAVDLHPINGVHKGMRVRNRAHHHRSAVIISVVTSA 152
E+ G+++LHPI G R A+H +A + +V S+
Sbjct: 61 ELWCGSIELHPIRRCINGERTVRIANHDGAAPVTRIVGSS 100
>06_01_0071 + 592662-592973
Length = 103
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 30 AEVVSGAVDLHPINGVHKGMRVRNRAHHHRSAVIISVVTSAA 155
A V + ++LH +H+ +++R H H + V +AA
Sbjct: 50 ARVAAAKMELHQDKALHREEAIQHRLHKHGAGTTAGVRPTAA 91
>08_02_1267 +
25728324-25728407,25728436-25728502,25728753-25728828,
25729388-25729450,25729640-25729896,25731299-25731440,
25731524-25732017,25732398-25732536,25733805-25733876,
25733960-25734040,25734677-25734843,25734942-25735147,
25735301-25735427,25735515-25735639
Length = 699
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 179 VPDRLRDVRRGSYDGNYNCAAVVVRSVPDP 90
VPD + + + S + YN + V+RSV P
Sbjct: 252 VPDTVNGIVQNSPNDTYNVPSAVMRSVSTP 281
>08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527
Length = 710
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 25 PTQRWCRAPWTSTQSM 72
PT+ WCRA WT S+
Sbjct: 303 PTKPWCRAFWTVPASI 318
>04_04_1158 -
31342934-31343272,31343508-31343658,31343745-31343976,
31344173-31344284,31344572-31344690,31344772-31344936,
31345049-31345247,31345351-31345733,31345838-31345902,
31346003-31346047,31346402-31346467,31346707-31346778,
31346907-31346981,31347086-31347157,31347255-31347326,
31347954-31348022,31348109-31348180,31348280-31348351,
31348756-31348827,31349295-31349366,31349528-31349711,
31350082-31350220
Length = 948
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 90 RVRNRAHHHRSAVIISVVTSAADVAEA 170
RVR + H H S ++I ++ AA VA+A
Sbjct: 8 RVRRQIHLHGSVLLIILLLLAAAVAQA 34
>05_04_0154 - 18549806-18550161,18550271-18550907
Length = 330
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 108 HHHRSAVIISVVTSAADVAEAV 173
HHHR+A + +AA AE V
Sbjct: 11 HHHRAAAAAAAAAAAAAAAEPV 32
>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
Length = 622
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 179 VPDRLRDVRRGSYDGNYNCAAVVVRSVPDPHPLVHP 72
VP L DV + +++ A RS P P PL HP
Sbjct: 13 VPSLLPDVEVTNV-ASFDVTAPSPRSQPSPRPLPHP 47
>05_01_0240 - 1791138-1791470
Length = 110
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Frame = -3
Query: 121 LRW-----WCALFLTLIPLCTPLIGWRSTAPDTTSAW 26
LRW W L ++ L PL+ + APDT + W
Sbjct: 45 LRWLRRAVWRLAELCVVALSGPLVARVAAAPDTPAPW 81
>03_01_0037 -
335646-335855,336480-336686,336962-337129,337377-337973
Length = 393
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 119 AVVVRSVPDPHPLVHPIDWVEVHGARHHL 33
AV R + D PL DW E +R HL
Sbjct: 56 AVSERRIRDRRPLYTHADWREHRSSRRHL 84
>02_01_0069 + 491452-492594
Length = 380
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 131 YNCAAVVVRSVPDP-HPLVHPIDW 63
YN A+ VR +PDP P + PI +
Sbjct: 97 YNAASAAVRYMPDPCKPKMEPISF 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,379,991
Number of Sequences: 37544
Number of extensions: 76928
Number of successful extensions: 324
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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