Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I22
         (183 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-1|CAA93767.1|  689|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    25   5.4  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    25   5.4  
Z81586-1|CAB04690.1|  579|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    25   7.1  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z69902-1|CAA93767.1|  689|Caenorhabditis elegans Hypothetical
           protein C47D12.2 protein.
          Length = 689

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 75  VHKGMRVRNRAHHHRSAVIISVVTSAADV 161
           +H G+   N +HH   A+I++++ S  D+
Sbjct: 403 LHDGVATSNNSHHVYLALIVALILSEDDI 431


>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -2

Query: 104 SVPDPHPLVHPIDWVEVHGARHHLCVGLLHHHPR 3
           +V  P P  +P     V  A HH      HHHPR
Sbjct: 356 TVQSPRPAYNPYWQSPVTQAPHHNSHHHHHHHPR 389


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -2

Query: 104 SVPDPHPLVHPIDWVEVHGARHHLCVGLLHHHPR 3
           +V  P P  +P     V  A HH      HHHPR
Sbjct: 356 TVQSPRPAYNPYWQSPVTQAPHHNSHHHHHHHPR 389


>Z81586-1|CAB04690.1|  579|Caenorhabditis elegans Hypothetical
           protein T05F1.2 protein.
          Length = 579

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 143 YDGNYNCAAVVVRSVPDPHPLVHP 72
           +DG Y C + + + VP+  P+ +P
Sbjct: 169 HDGRYFCRSYIKKVVPEDWPVQYP 192


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 116 VVVRSVPDPHPLVHPIDWVEVHGAR 42
           VV R    P PL  P+  V+ HG +
Sbjct: 121 VVTRGTRQPGPLCQPVVHVQTHGIK 145


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 74  GAQGDEGQEQSAPPPQRSY 130
           G  G  G +Q  PPPQ  Y
Sbjct: 135 GTVGAPGYQQQQPPPQEGY 153


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 74  GAQGDEGQEQSAPPPQRSY 130
           G  G  G +Q  PPPQ  Y
Sbjct: 135 GTVGAPGYQQQQPPPQEGY 153


>U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical
           protein F36D4.4 protein.
          Length = 472

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 121 LRWWCALFLTLIPLCTPLIGWRST 50
           +RWW  + + +  +C PL  +R T
Sbjct: 314 IRWWLQVLIGVHSVCQPLCYFRMT 337


>AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical
           protein Y67H2A.10 protein.
          Length = 608

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 95  QEQSAPPPQRS 127
           Q+Q APPPQRS
Sbjct: 530 QQQQAPPPQRS 540


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,244,304
Number of Sequences: 27780
Number of extensions: 53048
Number of successful extensions: 228
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 41
effective length of database: 11,601,218
effective search space used: 220423142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)