Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I19
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    23   7.1  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    22   9.4  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    22   9.4  

>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 49  NHNTRMIHINKVF 11
           N N R+ H+N+VF
Sbjct: 626 NENARVAHVNRVF 638


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 74  FITNISLK*PQHTYDSHK 21
           F+T +  K P+H   SHK
Sbjct: 421 FMTKLETKTPKHASSSHK 438


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 167 IYSQFVNTTNRYNVFFHTHKHTSIL 93
           I++  +   N YN F H  K+ S +
Sbjct: 463 IFTGLITFFNGYNAFIHGFKYRSFI 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 761,027
Number of Sequences: 5004
Number of extensions: 11717
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)