Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I19
         (178 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0609 - 30335054-30335374,30335491-30335870,30336102-303364...    29   0.70 
11_06_0345 + 22544825-22544921,22545751-22545773,22546604-225466...    27   2.8  
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962...    25   8.6  

>02_05_0609 -
           30335054-30335374,30335491-30335870,30336102-30336443,
           30336551-30336700,30336781-30336878,30336986-30337045,
           30337140-30337211,30337337-30337480,30337584-30337655,
           30337767-30337899,30338076-30338181
          Length = 625

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 139 IGTMFFFIPINILASYWQSRPNLSLIFR*NNHNTRMIHINKV 14
           IG + F IP+  L  +W+ R N  ++F  +  +T  +++  V
Sbjct: 249 IGCISFLIPVMGLLFWWRHRRNHQILFDVDEQHTENVNLGNV 290


>11_06_0345 +
           22544825-22544921,22545751-22545773,22546604-22546690,
           22546809-22546885,22547357-22547510
          Length = 145

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 169 QFIHNLLTPQIGTMFFFIPINILA 98
           +F H +L  +IG    F PIN+LA
Sbjct: 65  KFFHKILQEEIGVKGHFGPINVLA 88


>04_03_0024 -
           9623178-9624001,9624502-9624678,9625144-9625305,
           9625520-9626032,9626801-9629153
          Length = 1342

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 112 INILASYWQSRPNLSLIFR*NNHNTRMIHINKVFFL 5
           + I  SY + +P    I++  N N   I   K +FL
Sbjct: 746 VQIPLSYGEDKPRSKRIYKHQNRNNNNIRTKKRYFL 781


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,246,150
Number of Sequences: 37544
Number of extensions: 58602
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 14,793,348
effective HSP length: 38
effective length of database: 13,366,676
effective search space used: 267333520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)