Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I19
         (178 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   0.78 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   1.8  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    19   4.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   4.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    19   5.5  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    19   7.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    18   9.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    18   9.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 0.78
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 167 IYSQFVNTTNRYNVFFHTHKHTS 99
           +Y+  +  TNR +  F+  KH++
Sbjct: 735 VYAALLTKTNRISRIFNASKHSA 757


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 102 SMFMGMKKNIVPICGVNKL 158
           +MF G+K +I P+  V  L
Sbjct: 244 TMFTGLKSDIPPVAYVKAL 262


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -1

Query: 127 FFFIPINILASYWQSRPNLSL 65
           FFF+ + ++ SY+ + P +S+
Sbjct: 9   FFFLSVILITSYFVT-PTMSI 28


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 7   GKKPYLCE 30
           G+KPY CE
Sbjct: 116 GEKPYQCE 123



 Score = 19.4 bits (38), Expect = 4.2
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = +1

Query: 7   GKKPYLCES 33
           G+KPY+C++
Sbjct: 200 GEKPYVCKA 208



 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 7   GKKPYLCE 30
           G+KPY C+
Sbjct: 228 GEKPYTCD 235


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 47  PQHTYDSHK 21
           P HT D HK
Sbjct: 120 PNHTSDQHK 128


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
          protein.
          Length = 74

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +1

Query: 7  GKKPYLCE 30
          G++PY CE
Sbjct: 62 GERPYACE 69


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -3

Query: 167 IYSQFVNTTNRYNVFFHT 114
           + +QF+N   + +V  HT
Sbjct: 421 VTAQFLNQLKKSSVLVHT 438


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +2

Query: 110 YGYEKKHCTYLW 145
           +GY K+   Y W
Sbjct: 151 FGYTKRDVIYKW 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,539
Number of Sequences: 438
Number of extensions: 813
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 38
effective length of database: 129,699
effective search space used:  2593980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)