Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I18
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c...    28   0.19 
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    25   1.3  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    25   1.3  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   1.8  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    24   3.1  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    23   4.1  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    23   4.1  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    23   5.4  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    23   5.4  
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    23   5.4  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    23   7.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    23   7.1  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    23   7.1  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    22   9.4  

>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 124

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 85  DSNHIIILETDHNSYTEDMKKQRRVQMAQEMREAAAGGGPEEQQLANEMAD 237
           DS+  +++      +   +K  R     QE  EAA   G  +Q +A+++AD
Sbjct: 66  DSSQALLVHKKGKVHKRRLKNLREEPYTQEEAEAAVNIGQPKQSVASKLAD 116


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 49  LDYTPRKFVINSDSNHIIILETDHN 123
           L YTP  + +    N ++I+  DHN
Sbjct: 218 LRYTPSNYSLKDIENLMVIISQDHN 242


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 82  SDSNHIIILETDHNSYTEDMKKQ 150
           ++SN  + +E D NSY E  KK+
Sbjct: 111 AESNSSVAVEGDENSYAETPKKK 133


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1040

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 88   SNHIIILETDHNSYTEDMKKQRRVQMAQE 174
            +NH+IIL+   N Y E+    R  ++ Q+
Sbjct: 954  ANHVIILDPFWNPYIEEQAVDRAHRIGQD 982


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 157 VQMAQEMREAAAGGGPEEQQLANEMADA 240
           ++  +E + AAA    EE QLA + A A
Sbjct: 213 IEREEEQKAAAAAAAEEEAQLAAQTAAA 240


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 161 WTLLCFFISSV*EL-WSVSRIIIWLLSELITNFLG 60
           W    FF S   E  WSV R+I  +   ++T+F G
Sbjct: 257 WRTRRFFRSMFYERSWSVERVIECIRYSILTHFYG 291


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 193 GGGPEEQQLANEMAD 237
           GGGP   + A EMAD
Sbjct: 261 GGGPTGMEFAGEMAD 275


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 28  FNQTYLPLDYTPRKFVINSDSN 93
           FNQ+ +P ++TP   +  +DS+
Sbjct: 47  FNQSIMPANFTPAGGIDTNDSS 68


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 67  KFVINSDSNHIIILETDHNSYTEDMK 144
           KF+  +      ++ET+H  YTE +K
Sbjct: 185 KFLFEAKERLTSVVETEHEYYTELVK 210


>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 115 DHNSYTEDMKKQRRVQMAQEMREAAAGGG 201
           D  S ++DM K+ R       RE   GGG
Sbjct: 28  DLESSSKDMAKELRPLQITSAREVEVGGG 56


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 127 YTEDMKKQRRVQMAQEMREAAAGGGPEEQQLANEMAD 237
           + +D+  + R ++   +     GGGP   + A EM D
Sbjct: 242 FNKDLSPEERARL---LHITVVGGGPTGMEFAAEMQD 275


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 169  QEMREAAAGGGPEEQQLANEMADA 240
            QE+ E A G       L NE+ADA
Sbjct: 1666 QEVEELARGFQTTNADLQNELADA 1689


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 124 SYTEDMKKQRRVQMAQEMRE 183
           ++  ++ K+R+ + AQEMRE
Sbjct: 531 TFKSEISKRRKQRKAQEMRE 550


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 170 KRCEKLQLEVDLKSNN 217
           KRC++L  E+D+  N+
Sbjct: 442 KRCDQLNREIDILQNH 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.128    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 866,363
Number of Sequences: 5004
Number of extensions: 12850
Number of successful extensions: 35
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)