Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I18
         (240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    47   2e-06
01_01_0045 - 330630-331274                                             27   2.8  
06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124     26   4.9  
01_06_1200 - 35362412-35362432,35362526-35362715,35362799-353628...    25   6.5  
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    25   6.5  
08_02_0352 + 16146025-16146642                                         25   8.5  
06_03_1024 - 26958473-26958661,26958750-26958815,26959234-269593...    25   8.5  

>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = +1

Query: 10  EKLGAVFNQTYLPLDYTPRKFVINSDSNHIIILETDHNSYTEDMKKQRRVQMAQEMREAA 189
           E LG  FN+T +PL YTPRKFVI     ++ ++E+D  + + + ++  + +  +      
Sbjct: 779 EHLGETFNETAIPLRYTPRKFVILPKKKYLAVIESDKGALSAEEREAAKKECLEAAGVTE 838

Query: 190 AGGGPEEQQLAN 225
            G      Q+ N
Sbjct: 839 NGNANNGDQMEN 850


>01_01_0045 - 330630-331274
          Length = 214

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 109 ETDHNSYTEDMKKQRRVQMAQEMREAAAGGGPEEQQLAN 225
           ETD  +  ++ KK++     +  R+    GG  EQ+ A+
Sbjct: 111 ETDKETSKKNRKKKKHESQQENARDVKQNGGAPEQRFAS 149


>06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124
          Length = 904

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 10  EKLGAVFNQTYLPLDYTPRKFVINSDSNHIIILET 114
           E +G++ +  YL L YTP   + N  +  +  LET
Sbjct: 557 EHIGSLLHLRYLALTYTPLSELPNGIAGRLRFLET 591


>01_06_1200 -
           35362412-35362432,35362526-35362715,35362799-35362899,
           35362985-35363116,35363204-35363302,35363493-35363568,
           35363649-35363941,35364032-35364160,35364332-35364480,
           35364562-35364633,35364728-35364776,35365039-35365107,
           35365201-35365256,35365357-35365429,35365508-35365584,
           35365847-35365934,35366086-35366259,35366358-35366473,
           35366681-35366984,35367084-35367146,35367224-35367286,
           35367393-35367506,35368672-35368675,35368894-35368952,
           35369024-35369098,35369691-35369798,35372331-35372792
          Length = 1071

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 155 ESKWHKRCEKLQLEVDLKSNNSLM 226
           ESK+H RC  +  + DL  N S++
Sbjct: 778 ESKFHDRCNNMTAQSDLIYNASIL 801


>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
            26699321-26699416
          Length = 1515

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 91   NHIIILETDHNSYTEDMKKQRRV 159
            NH++ ++T  N +TE M+K R +
Sbjct: 1265 NHLVQIDTLENKHTEIMEKHRHL 1287


>08_02_0352 + 16146025-16146642
          Length = 205

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 151 RRVQMAQEMREAAAGGGPE 207
           RR   A + REAAA GGP+
Sbjct: 42  RRPDPASDGREAAASGGPD 60


>06_03_1024 -
           26958473-26958661,26958750-26958815,26959234-26959303,
           26959526-26959773,26959938-26960029,26960726-26960871,
           26961001-26961185,26961721-26961838,26961948-26962087
          Length = 417

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 139 MKKQRRVQMAQEMREAAAGGGPEEQQLANEM 231
           ++K  RV +A  +REAAAG   EE  L N M
Sbjct: 353 LRKMVRVLVATAIREAAAGA--EEDALLNLM 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.128    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,657,449
Number of Sequences: 37544
Number of extensions: 83619
Number of successful extensions: 259
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)