Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I17
         (218 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0205 - 13483981-13484291,13484402-13484531,13484742-13484939     29   0.67 
07_03_1557 - 27699675-27699972,27700546-27700630,27700741-277008...    27   2.1  
05_07_0300 - 29081563-29081712,29082183-29082266,29082354-290823...    25   6.3  
09_06_0234 - 21747724-21747839,21748027-21748096,21749157-217492...    25   8.3  
02_01_0594 - 4413016-4413091,4413201-4413268,4413387-4413482,441...    25   8.3  

>09_03_0205 - 13483981-13484291,13484402-13484531,13484742-13484939
          Length = 212

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 58  LQNKYFLP-YSSWATVPKR-NLLLIFVKVKQNLY 153
           +QNK FLP    W   PK  +L L+FV VKQ+LY
Sbjct: 174 MQNKVFLPKLYEW---PKTIHLTLLFVMVKQHLY 204


>07_03_1557 -
           27699675-27699972,27700546-27700630,27700741-27700847,
           27700942-27701135,27701252-27701368,27701466-27701631,
           27701723-27701887,27702185-27703428
          Length = 791

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 208 FLFVLA*RDLFLKXRTQVDRDSVLLSQKSTIDFSLVL 98
           F+F L  +  F + + QVDRD   L Q+  +D+SL++
Sbjct: 615 FIFRLK-KQWFHEFQRQVDRDCDFLEQEKIMDYSLLV 650


>05_07_0300 -
           29081563-29081712,29082183-29082266,29082354-29082394,
           29082486-29082580,29082655-29082750,29082821-29082909,
           29082988-29083284,29083631-29083657
          Length = 292

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 54  NITKQIFSALFVMGYSTKEKSIVDFCESKTESLSTWVRFFRNRSLYAKTKRN 209
           N   Q   ++  +  ++K K I++  +  T+   T VRFFR+   Y   K N
Sbjct: 242 NALAQAIGSIEAIAKASK-KFILENTDLSTDKAETIVRFFRDPQYYLSPKIN 292


>09_06_0234 -
           21747724-21747839,21748027-21748096,21749157-21749294,
           21749389-21749493,21750157-21750527,21750612-21750694,
           21750803-21751063,21751425-21751606,21752539-21752649,
           21752727-21752798,21752883-21753036,21753329-21753341,
           21754015-21754084,21754409-21754485,21754582-21754640,
           21755327-21755580
          Length = 711

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 87  VMGYSTKEKSIVDFCESKTESLSTWVRFF 173
           V+G  +++ +++DFC       ST +RF+
Sbjct: 57  VVGVGSRKDAVIDFCLGSRTLSSTPIRFW 85


>02_01_0594 -
           4413016-4413091,4413201-4413268,4413387-4413482,
           4413600-4413689,4413760-4413886,4413983-4414038,
           4414203-4414379,4414464-4415057
          Length = 427

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 79  PYSSWATVPKRNLL 120
           P SSWAT+P R LL
Sbjct: 147 PASSWATLPNRALL 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,777,750
Number of Sequences: 37544
Number of extensions: 68955
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)