Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I17
         (218 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49888-4|CAH60776.1|  742|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z49888-3|CAA90063.2|  759|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z47809-3|CAA87781.2|  322|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AF039716-3|AAB96736.1|  515|Caenorhabditis elegans Hypothetical ...    25   7.3  
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    25   9.6  
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U40417-1|AAA81411.1|  114|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>Z49888-4|CAH60776.1|  742|Caenorhabditis elegans Hypothetical
           protein F47A4.3b protein.
          Length = 742

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 96  YSTKEKSIVDFCESKTESLSTWVRFFRNRSLYAKTKRNR 212
           ++T  KS     + ++ES S W RFFR +S+    K NR
Sbjct: 474 FTTISKSAT-MSDMRSESESKWPRFFRGKSVEGFWKFNR 511


>Z49888-3|CAA90063.2|  759|Caenorhabditis elegans Hypothetical
           protein F47A4.3a protein.
          Length = 759

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 96  YSTKEKSIVDFCESKTESLSTWVRFFRNRSLYAKTKRNR 212
           ++T  KS     + ++ES S W RFFR +S+    K NR
Sbjct: 491 FTTISKSAT-MSDMRSESESKWPRFFRGKSVEGFWKFNR 528


>Z47809-3|CAA87781.2|  322|Caenorhabditis elegans Hypothetical
           protein F42A8.3 protein.
          Length = 322

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 51  CNITKQIFSALFVMGYSTKEKSIVDFCESKTESLSTWVRFFRNRSLYA-KTKRNRDL 218
           CN+ K  F  LF   +       VDFC     +++  +  + +    A K  RNRDL
Sbjct: 188 CNLCKTTFDELFGYYWKIYTTPDVDFCVDVETTMNDTIHLWDDVWKCAEKQDRNRDL 244


>AF039716-3|AAB96736.1|  515|Caenorhabditis elegans Hypothetical
           protein W03G9.2 protein.
          Length = 515

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 132 ESKTESLSTWVRFFRNRSLYAKTK 203
           ES  ES     RFF  R+LY++TK
Sbjct: 12  ESPLESEEHLKRFFAGRNLYSQTK 35


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 126 FCESKTESLSTWVRFFRNRS 185
           FC SK+  L TW     NRS
Sbjct: 199 FCPSKSNLLGTWAEMRVNRS 218


>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical protein
            F10F2.2 protein.
          Length = 1343

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 132  ESKTESLSTWVRFFRN 179
            + KT +LS W++ FRN
Sbjct: 1322 DQKTVALSPWIKMFRN 1337


>U40417-1|AAA81411.1|  114|Caenorhabditis elegans Hypothetical
           protein T08A9.6 protein.
          Length = 114

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +3

Query: 102 TKEKSIVDFCESKTESLSTWVRFFRNRSLYAKTKRNRDL 218
           +KEK  + FC +  ++      F   R+++ +T +  DL
Sbjct: 71  SKEKKSISFCNNGQKNRPLTFNFTSKRAVFKRTVKFEDL 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,435,767
Number of Sequences: 27780
Number of extensions: 69877
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)