Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I16
         (152 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    24   3.1  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    23   7.2  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    22   9.5  

>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 23  CVNKLEKDLRYFSFPINIDISF 88
           CVNK+ +  RYFS    +D  F
Sbjct: 385 CVNKISEARRYFSKSSTMDPQF 406


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 2   HEASIDKCVNKLEKDLRYFSFPINIDISFIDVPVMILTYYLFSS 133
           HE     C N     LR+FSF I +   F      I  ++LF++
Sbjct: 303 HEDIAKACRNAAPPILRHFSFGIVVLAIFSYCNFGIKQFFLFAA 346


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 8   ASIDKCVNKLEKDLRYFSFPINIDISFIDVPVMILTY 118
           AS +  +N    +   F FP +I  S+ID+ + ++++
Sbjct: 518 ASSESFINGQIAEKNSFQFPCSILPSYIDLFISLMSF 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 532,483
Number of Sequences: 5004
Number of extensions: 6873
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)