Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I15
         (252 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1614 - 28243532-28244589,28245149-28245383,28245524-282457...    25   6.4  
03_04_0127 - 17508808-17509029,17509195-17509938,17510004-175102...    25   6.4  

>08_02_1614 -
           28243532-28244589,28245149-28245383,28245524-28245734,
           28245834-28245907,28246465-28246665
          Length = 592

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 119 ESQADVIGEQGAKDSDDVSMKFSTCER*RRGVFSCKLSDIT 241
           + +A    ++GAK S   S   S  ++   G+ + KLSD T
Sbjct: 12  QKKAAAAAKRGAKASSSSSSSSSAADKAANGIAALKLSDRT 52


>03_04_0127 -
           17508808-17509029,17509195-17509938,17510004-17510242,
           17510334-17510436,17510666-17510770,17510838-17510906,
           17510998-17511402,17512048-17512156,17512240-17512295
          Length = 683

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 92  SNNGAPDSWESQADVIGE 145
           +NN AP SW ++  +IGE
Sbjct: 404 TNNSAPLSWYNRTQIIGE 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,115,940
Number of Sequences: 37544
Number of extensions: 94164
Number of successful extensions: 124
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)