Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I15
(252 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50858-6|CAD44135.1| 949|Caenorhabditis elegans Hypothetical pr... 26 3.1
AL021567-6|CAD44122.1| 949|Caenorhabditis elegans Hypothetical ... 26 3.1
AL021567-2|CAD44121.1| 947|Caenorhabditis elegans Hypothetical ... 26 3.1
AL021567-1|CAA16508.2| 898|Caenorhabditis elegans Hypothetical ... 26 3.1
AF098996-2|AAC68711.3| 431|Caenorhabditis elegans Hypothetical ... 26 3.1
Z12017-7|CAH19088.1| 856|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z12017-5|CAA78052.2| 859|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z81530-8|CAB04305.2| 329|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical pr... 25 7.1
AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical ... 25 7.1
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 25 9.4
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ... 25 9.4
>Z50858-6|CAD44135.1| 949|Caenorhabditis elegans Hypothetical
protein F21A10.2c protein.
Length = 949
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -1
Query: 234 SDNLQEKTPRR*RSHVENFIDTSSESFAPCSPITSA*LSQESGAPLLDIFK 82
S N + P R R ++ +D S AP S A +++E G P + FK
Sbjct: 215 SINGSDDIPNRKRPRMDQNMDPSFIMHAPVSGKLGAEVTEEGGQPNIRFFK 265
>AL021567-6|CAD44122.1| 949|Caenorhabditis elegans Hypothetical
protein F21A10.2c protein.
Length = 949
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -1
Query: 234 SDNLQEKTPRR*RSHVENFIDTSSESFAPCSPITSA*LSQESGAPLLDIFK 82
S N + P R R ++ +D S AP S A +++E G P + FK
Sbjct: 215 SINGSDDIPNRKRPRMDQNMDPSFIMHAPVSGKLGAEVTEEGGQPNIRFFK 265
>AL021567-2|CAD44121.1| 947|Caenorhabditis elegans Hypothetical
protein F21A10.2b protein.
Length = 947
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -1
Query: 234 SDNLQEKTPRR*RSHVENFIDTSSESFAPCSPITSA*LSQESGAPLLDIFK 82
S N + P R R ++ +D S AP S A +++E G P + FK
Sbjct: 213 SINGSDDIPNRKRPRMDQNMDPSFIMHAPVSGKLGAEVTEEGGQPNIRFFK 263
>AL021567-1|CAA16508.2| 898|Caenorhabditis elegans Hypothetical
protein F21A10.2a protein.
Length = 898
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -1
Query: 234 SDNLQEKTPRR*RSHVENFIDTSSESFAPCSPITSA*LSQESGAPLLDIFK 82
S N + P R R ++ +D S AP S A +++E G P + FK
Sbjct: 164 SINGSDDIPNRKRPRMDQNMDPSFIMHAPVSGKLGAEVTEEGGQPNIRFFK 214
>AF098996-2|AAC68711.3| 431|Caenorhabditis elegans Hypothetical
protein T11F1.6 protein.
Length = 431
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +3
Query: 156 KIPMMCL*NFPRVNVNAVEFFPASCQT 236
K + C N + EFFP +C+T
Sbjct: 30 KCDLQCTFNHSEITSKTTEFFPTNCET 56
>Z12017-7|CAH19088.1| 856|Caenorhabditis elegans Hypothetical
protein R08D7.6c protein.
Length = 856
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 216 KTPRR*RSHVENFIDTSSESFAPCSPITS 130
+TPRR I + S S A CSP+ S
Sbjct: 817 RTPRRLWRRARQLISSMSSSCASCSPLPS 845
>Z12017-5|CAA78052.2| 859|Caenorhabditis elegans Hypothetical
protein R08D7.6a protein.
Length = 859
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 216 KTPRR*RSHVENFIDTSSESFAPCSPITS 130
+TPRR I + S S A CSP+ S
Sbjct: 820 RTPRRLWRRARQLISSMSSSCASCSPLPS 848
>Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical
protein ZC247.1 protein.
Length = 4404
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 177 IDTSSESFAPCSPITSA*LSQESGAP 100
I + SES AP SP+T A L+ E P
Sbjct: 188 IVSKSESHAPMSPVTKAKLNIELEIP 213
>Z81530-8|CAB04305.2| 329|Caenorhabditis elegans Hypothetical
protein F36D1.3 protein.
Length = 329
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -3
Query: 178 HRHII-GIFCTLFTYNIGLT 122
+ H++ FCTLFT++I +T
Sbjct: 199 YTHLLTSFFCTLFTFSINIT 218
>Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical
protein ZC247.1 protein.
Length = 4404
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 177 IDTSSESFAPCSPITSA*LSQESGAP 100
I + SES AP SP+T A L+ E P
Sbjct: 188 IVSKSESHAPMSPVTKAKLNIELEIP 213
>AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical
protein ZC247.1 protein.
Length = 4404
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 177 IDTSSESFAPCSPITSA*LSQESGAP 100
I + SES AP SP+T A L+ E P
Sbjct: 188 IVSKSESHAPMSPVTKAKLNIELEIP 213
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 127 LTFPRVWSTVIGHF*TNNVKLINKSLSY 44
L FP V+ +GH +KL KSL++
Sbjct: 4 LQFPGVYVEDVGHLAFGTLKLTEKSLNF 31
>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
protein Y81G3A.3 protein.
Length = 1696
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 92 SNNGAP-DSWESQADVIGEQGAKDSDDVSMKFSTCE 196
S NG P + WE D IG Q + S + + CE
Sbjct: 1149 SANGHPHERWECCVDCIGPQCSSPSLEAELLLVACE 1184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,443,791
Number of Sequences: 27780
Number of extensions: 88425
Number of successful extensions: 182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -