Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I14
(414 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 82 4e-17
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 81 7e-17
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 27 0.87
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.5
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 1.5
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 1.5
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 26 2.0
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 2.7
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 4.7
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos... 25 6.1
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce... 25 6.1
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 25 6.1
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po... 24 8.1
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 81.8 bits (193), Expect = 4e-17
Identities = 40/66 (60%), Positives = 48/66 (72%)
Frame = +2
Query: 182 KLLGSPPIFMRRLIHSQVRGISVKLQEEERERRDKYVPEVSALEQDIIEVDSDTKDMLKM 361
K+ G M+R+ VRGIS KLQEEERER+D+YVPEVS LE+D I VD DTKDMLK
Sbjct: 49 KIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKA 108
Query: 362 LDFSNI 379
L + +I
Sbjct: 109 LGYDSI 114
Score = 71.7 bits (168), Expect = 4e-14
Identities = 34/56 (60%), Positives = 38/56 (67%)
Frame = +1
Query: 37 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTH 204
MGRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTH
Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTH 56
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 81.0 bits (191), Expect = 7e-17
Identities = 42/77 (54%), Positives = 52/77 (67%)
Frame = +2
Query: 182 KLLGSPPIFMRRLIHSQVRGISVKLQEEERERRDKYVPEVSALEQDIIEVDSDTKDMLKM 361
K+ G M+R+ VRGIS KLQEEERER+D+YVPEVS LE D + VD DTKDMLK
Sbjct: 49 KIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKS 108
Query: 362 LDFSNINGLQLTQPATQ 412
L + I +++ PA Q
Sbjct: 109 LGYDQI-PVRVLAPAPQ 124
Score = 71.7 bits (168), Expect = 4e-14
Identities = 34/56 (60%), Positives = 38/56 (67%)
Frame = +1
Query: 37 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTH 204
MGRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTH
Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTH 56
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 27.5 bits (58), Expect = 0.87
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 207 KMGGEPSNFVAKRLSRNDSNFLTYPFIGIE 118
++ G FV + LS+ND NF+ P +G E
Sbjct: 241 RLAGSDPYFV-RSLSKNDKNFIMIPTVGYE 269
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 227 SQVRGISVKLQEEERERRDKYVPEV 301
S V IS+K QEEER+R+ + E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 26.6 bits (56), Expect = 1.5
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 218 LIHSQVRGISVKLQEEERERRDKYVPEVSALEQDIIEVDSDTKDMLKMLDFSNIN 382
L+H Q+R + KL E+R+K + +E + + + + L+FSN N
Sbjct: 885 LLHDQIRITNAKL-----EKREKLINASKYIEDTLRSEIQEAAEKVSNLEFSNFN 934
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 1.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 212 RRLIHSQVRGISVKLQEEERERRDKYVPEVS 304
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 2.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Frame = +2
Query: 260 EEERERRDKYV------PEVSALEQDIIE------VDSDTKDMLKMLDFSNINGLQL 394
EEE+ER Y+ P +S +E +++ +++ + M+D SN GLQL
Sbjct: 265 EEEKERSKNYLFTKIASPLLSVVEDELLSKHLDDLLENQSTGFFSMIDSSNFEGLQL 321
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.8 bits (54), Expect = 2.7
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 200 PIFMRRLIHSQVRGISVKLQEEERERRDKYVPEVSALEQDIIEVD-SDTKDMLK 358
P F +++ Q+ +++ Q+E R + +K + +S LEQ ++ SDT+ K
Sbjct: 1176 PAFEKQMELRQLGPEALRRQKELRLKMEKVLKSLSTLEQQAVDARMSDTRRFKK 1229
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.0 bits (52), Expect = 4.7
Identities = 14/62 (22%), Positives = 33/62 (53%)
Frame = +2
Query: 227 SQVRGISVKLQEEERERRDKYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPA 406
SQ+R ++V ++ + ++ D YV + I + +S + ++LD+ NG ++ A
Sbjct: 759 SQLRRMAVIVKHGKFKKMDAYVKGAPEIMPSICKPESFPANYQEVLDYYTHNGFRVIACA 818
Query: 407 TQ 412
++
Sbjct: 819 SK 820
>SPBC1347.06c |cki1||serine/threonine protein kinase
Cki1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 24.6 bits (51), Expect = 6.1
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 124 TNKRICEEIAIIP-TKPLRNKIAGFTTHFYETSHTLPGARNL 246
TNK+ E I + PLR AGF FY+ H ARNL
Sbjct: 225 TNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHY---ARNL 263
>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 6.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 101 LGLLLTSIPIKGYVRKLLSFLLSLFATKLL 190
+GLL TS I R L ++LFAT LL
Sbjct: 94 VGLLYTSASIYQMTRGSLIIFVALFATTLL 123
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 6.1
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 257 QEEERERRDKYVPEVSALEQDIIE--VDSDTKDMLKMLDFSNIN 382
++ +RER DK +P+ S E + IE V S T+ LK + + N
Sbjct: 72 KKNKRERNDKLIPQQSN-ESEAIEKPVQSTTEVELKTNELAESN 114
>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 24.2 bits (50), Expect = 8.1
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 189 WVHHPFL*DVSYTPRCEESLLSF 257
+VH+PF+ + ++ C +S L+F
Sbjct: 114 YVHYPFVGNSNFVAYCTKSFLAF 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,795
Number of Sequences: 5004
Number of extensions: 32025
Number of successful extensions: 121
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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