Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I14
(414 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0174 + 13815478-13815903 73 1e-13
03_01_0066 - 537729-538163 71 4e-13
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114... 31 0.36
12_02_0534 - 20103908-20105897,20106314-20107116 29 1.5
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 28 3.4
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 27 5.9
10_08_0019 - 14167952-14171059 27 7.8
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713... 27 7.8
08_01_0874 + 8575718-8576422,8576603-8576662,8576799-8576945,857... 27 7.8
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 27 7.8
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 27 7.8
03_02_0121 + 5737584-5737670,5738181-5738235,5739366-5739745 27 7.8
>10_07_0174 + 13815478-13815903
Length = 141
Score = 72.5 bits (170), Expect = 1e-13
Identities = 31/56 (55%), Positives = 40/56 (71%)
Frame = +1
Query: 37 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTH 204
MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGFTTH
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTH 56
Score = 69.3 bits (162), Expect = 1e-12
Identities = 36/73 (49%), Positives = 48/73 (65%)
Frame = +2
Query: 182 KLLGSPPIFMRRLIHSQVRGISVKLQEEERERRDKYVPEVSALEQDIIEVDSDTKDMLKM 361
K+ G MRR+ VRGIS+KLQEEERERR +VPE SALE + I VD +T +ML
Sbjct: 49 KVAGFTTHLMRRIQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAA 108
Query: 362 LDFSNINGLQLTQ 400
L +++ G++ Q
Sbjct: 109 LGMADLPGVERQQ 121
>03_01_0066 - 537729-538163
Length = 144
Score = 70.9 bits (166), Expect = 4e-13
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +1
Query: 37 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTH 204
MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+TH
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTH 56
Score = 69.3 bits (162), Expect = 1e-12
Identities = 38/74 (51%), Positives = 49/74 (66%)
Frame = +2
Query: 182 KLLGSPPIFMRRLIHSQVRGISVKLQEEERERRDKYVPEVSALEQDIIEVDSDTKDMLKM 361
K+ G MRR+ VRGIS+KLQEEERERR +VP+ SALE D I VD +T DML
Sbjct: 49 KVAGFSTHLMRRIQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTS 108
Query: 362 LDFSNINGLQLTQP 403
L +++ G+ + QP
Sbjct: 109 LGMADLPGV-VRQP 121
>02_04_0449 +
23010099-23010317,23010873-23010934,23011399-23011450,
23011803-23011917,23012024-23012118,23012852-23012958,
23013042-23013156,23014159-23014203,23014324-23014392
Length = 292
Score = 31.1 bits (67), Expect = 0.36
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 402 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADT 298
GC + +K+ +F+I LVSE S+I+C A T
Sbjct: 148 GCGNAAVSKNVKNKVFSIDLVSEDPSVIACDMAHT 182
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 203 IFMRRLIHSQVRGISVKLQEEER---ERRDKYVPEVSALEQDIIEVDSDTKDMLK 358
+F + + Q+ G+ + ++ + ERRD+Y+ + +A +++VDS + M +
Sbjct: 102 LFNKFKTNHQIHGVMKDIMDQVKKVSERRDRYIVDDNAARPTVVDVDSRLEAMYR 156
>10_08_0683 - 19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 240 PRTWECMRRLIKMGGEP-SNFVAKRLSRNDSNFLTYPFIGIEVKSK 106
P T ECMRR+ ++G + FV ++ + + YP + ++ K K
Sbjct: 972 PETMECMRRVRQIGEQNWERFVDNEVTEMRGHLMKYP-VSVDRKGK 1016
>04_03_0037 -
9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +2
Query: 278 RDKYVPEVSALEQDIIEVDSDTKDMLKM----LDFSNINGLQL 394
+++ + +V LEQD++ D+ TK+++ LD S N L+L
Sbjct: 789 KEQQLKDVGQLEQDLVFGDAGTKELINFFRTHLDISRENKLRL 831
>10_08_0019 - 14167952-14171059
Length = 1035
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 304 RYFWDILVTPFTLLFLKLNRDSSHLGVYETSHKNGW 197
R+ WD L F ++ L S G+ E K+GW
Sbjct: 161 RHVWDALADVFLIVLLVCAAVSLAFGIKEHGIKDGW 196
>08_02_0545 +
18470313-18470669,18470901-18471095,18471183-18471362,
18471462-18471656,18472081-18472179,18472271-18472780,
18472896-18473225
Length = 621
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 212 RRLIHSQVRGISVKLQEEERERRDKYVPEVSALEQDIIEVDSD 340
R IH QV+ I V + E +R+R+ ++ LE I VD +
Sbjct: 236 RGTIHDQVKQIGVGIDEVKRDRQ-AVRDKIKVLEDQIHAVDGE 277
>08_01_0874 +
8575718-8576422,8576603-8576662,8576799-8576945,
8577390-8577527
Length = 349
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 78 LRRFFYGLSPNTTHDCGDVSCLL 10
L+R Y S +T+H+ GD+ C++
Sbjct: 280 LKRIHYVPSASTSHEDGDIKCII 302
>08_01_0189 +
1578935-1578950,1579227-1579390,1579493-1579605,
1579850-1580399,1580514-1580813,1581093-1581133,
1581359-1581606,1581983-1582086,1582177-1582323
Length = 560
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 251 KLQEEERERRDKYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 379
KL+E++ E D+ V E+D +++D D +DF+ +
Sbjct: 178 KLEEKDGEEGDENVASEEEDEEDGLKIDEAKVDESAQMDFAKV 220
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 338 DTKDMLKMLDFSNINGLQLTQPATQ 412
DTKDMLK +D+ + G +T +Q
Sbjct: 597 DTKDMLKNVDWKTVGGGSVTTDPSQ 621
>03_02_0121 + 5737584-5737670,5738181-5738235,5739366-5739745
Length = 173
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 216 VSYTPRCEESLLSFKKRSVKGVTSMSQKYLL*NRISLKSIRTPRIC 353
+ Y PR + +L K +++G+ + ++ ISL+S R+ +IC
Sbjct: 102 IRYAPRVKVTLSRGKLSAIEGMKTKVVVWVKVASISLESFRSDKIC 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,387,858
Number of Sequences: 37544
Number of extensions: 192452
Number of successful extensions: 514
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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