Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I14
(414 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 70 8e-13
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 32 0.14
AF016684-7|AAB66206.1| 319|Caenorhabditis elegans Hypothetical ... 29 1.3
U39654-3|AAA80406.1| 490|Caenorhabditis elegans Hypothetical pr... 29 1.8
U39654-2|AAM51505.1| 510|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical pr... 28 2.3
AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math ... 27 4.1
AF040645-4|AAB94974.1| 306|Caenorhabditis elegans Hypothetical ... 27 7.1
>AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 17 protein.
Length = 130
Score = 69.7 bits (163), Expect = 8e-13
Identities = 31/56 (55%), Positives = 37/56 (66%)
Frame = +1
Query: 37 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTH 204
M RVRT YYTR+T DF NKR+C+E+AII +KPLRNKIAG+ TH
Sbjct: 1 MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITH 56
Score = 68.5 bits (160), Expect = 2e-12
Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Frame = +2
Query: 182 KLLGSPPIFMRRLIHSQVRGISVKLQEEERERRDKYVPEVSALEQD---IIEVDSDTKDM 352
K+ G MRR+ VRGIS+KLQEEERERRD Y+PE+S ++ I+VD+DT DM
Sbjct: 49 KIAGYITHLMRRIERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDM 108
Query: 353 LKMLDFS 373
LK F+
Sbjct: 109 LKAAGFN 115
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 32.3 bits (70), Expect = 0.14
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +2
Query: 209 MRRLIHSQVRGISVKLQEEERERRDKYVPEVSALEQDIIEVDSDTKDMLKMLDFSNING 385
+R L +V ++ ++ EE+ R + +++ QDI + D+ ++ML+ + +N NG
Sbjct: 214 IRELNEQRVDFLNAEVALEEKRRNSRIQDMITSAVQDITDKDTKLEEMLRAMPDTNSNG 272
>AF016684-7|AAB66206.1| 319|Caenorhabditis elegans Hypothetical
protein F45C12.7 protein.
Length = 319
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 90 FDYNLRRFFYGLSPNTTHD-CGDVSCLLVPK 1
FDYN R Y L+PN + C D L PK
Sbjct: 100 FDYNYLRCKYSLTPNCCQEKCSDNKVALTPK 130
>U39654-3|AAA80406.1| 490|Caenorhabditis elegans Hypothetical
protein C56G3.1a protein.
Length = 490
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 186 NFVAKRLSRNDSNFLTYPFIGI 121
N+ + +S N SN+LTYPF G+
Sbjct: 8 NYCDRGISPNASNYLTYPFDGL 29
>U39654-2|AAM51505.1| 510|Caenorhabditis elegans Hypothetical
protein C56G3.1b protein.
Length = 510
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 186 NFVAKRLSRNDSNFLTYPFIGI 121
N+ + +S N SN+LTYPF G+
Sbjct: 28 NYCDRGISPNASNYLTYPFDGL 49
>Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical
protein F15A4.8b protein.
Length = 808
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/92 (21%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = +2
Query: 137 YVRKLLSFLLS--LFATKLLGSPPIFMRRLIHSQ-VRGISVKLQEEERERRDKYVPEVSA 307
+++ +LSFL+ + + P R +S+ +R ++ KL+ +E+ V V
Sbjct: 151 FIKSILSFLIEHKIDGVDIFWKWPKLGNRASYSKFLRELNQKLKNQEKRYILSVV--VPP 208
Query: 308 LEQDIIEVDSDTKDMLKMLDFSNINGLQLTQP 403
++ D E+ D ++++ +DF N++ + P
Sbjct: 209 VDVDNFEMGFDLDEIIEHVDFLNVHSMDFAGP 240
>Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical
protein F15A4.8a protein.
Length = 755
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/92 (21%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = +2
Query: 137 YVRKLLSFLLS--LFATKLLGSPPIFMRRLIHSQ-VRGISVKLQEEERERRDKYVPEVSA 307
+++ +LSFL+ + + P R +S+ +R ++ KL+ +E+ V V
Sbjct: 151 FIKSILSFLIEHKIDGVDIFWKWPKLGNRASYSKFLRELNQKLKNQEKRYILSVV--VPP 208
Query: 308 LEQDIIEVDSDTKDMLKMLDFSNINGLQLTQP 403
++ D E+ D ++++ +DF N++ + P
Sbjct: 209 VDVDNFEMGFDLDEIIEHVDFLNVHSMDFAGP 240
>Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical
protein C03C10.4 protein.
Length = 244
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 209 MRRLIHSQVRGISVKLQEEERERRDKYVPEVSALEQ 316
+ R ++SQ+ +S+ L+ E +ER+D Y + ALEQ
Sbjct: 184 LTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALEQ 218
>AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math
domain containingprotein 3 protein.
Length = 306
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 225 TPRCEESLLSFKKRSVKGVTSMSQKYLL*N 314
T +CEE L+ F ++ +K +++KY L N
Sbjct: 235 TRKCEEFLIDFSEKPIKEKLKVAKKYQLEN 264
>AF040645-4|AAB94974.1| 306|Caenorhabditis elegans Hypothetical
protein F52C6.8 protein.
Length = 306
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 225 TPRCEESLLSFKKRSVKGVTSMSQKYLL 308
T +CEE L+ F ++ +K +++KY L
Sbjct: 235 TRKCEEFLIDFSEKPIKEKLKVAKKYQL 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,102,423
Number of Sequences: 27780
Number of extensions: 176631
Number of successful extensions: 565
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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