Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I13
         (192 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual    24   2.4  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    24   3.2  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    23   5.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    23   5.6  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    23   7.4  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    23   7.4  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    23   7.4  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    23   7.4  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    23   7.4  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    22   9.8  

>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 148 EKI*RTIKARVASAIEYISIDFDI 77
           + I + I+ RV   I Y+SID D+
Sbjct: 287 DAIIKRIRDRVGDGIAYLSIDIDV 310


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 99  TFLLISI*KNEKNAFNFY 46
           T LL+ + KNE++ FN Y
Sbjct: 108 TSLLLQLWKNERSVFNIY 125


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -3

Query: 79  IKERKKCVQLLRTIDCTLVRIPAARG 2
           +KE    V++++ +DC ++ + A +G
Sbjct: 468 LKEHNNPVRIIKLLDCLVLTLQADKG 493


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 100  ILSPKXXXXXXFSIFSPFYLRSL 168
            +L+PK       + FSPF+L  L
Sbjct: 1237 VLAPKERANNIINAFSPFFLELL 1259


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +1

Query: 34  NRSYVKVER--IFFVLLYRNQ*KCIL 105
           N S+ ++ER  + FV+L+ N  KC++
Sbjct: 280 NCSFDEIERKLLSFVMLFENTDKCLI 305


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 83  RYKRTKKMRSTFTYDRLHPRP 21
           R K+TKK + T   +  HP P
Sbjct: 134 RSKKTKKKKKTSLSNATHPAP 154


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 59  RSTFTYDRLHPRPNSCS 9
           R+  +YD LHPRP+  S
Sbjct: 130 RAIGSYDFLHPRPSGNS 146


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 190 HP*TNKPVTTSNKKEKI*RTIKARVASAIEYISIDFDIKERKKCVQLLRTID 35
           H     P+ +S  K K  R+ + ++    E    +  + E+KK  +LLRTID
Sbjct: 258 HEQAETPIPSSKNKRKT-RSQRNKIRQRREE---ELRLLEQKKNEELLRTID 305


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 118 VASAIEY-ISIDFDIKERKKCVQLLRTIDCTL 26
           V +A  Y + +D+D  + +   +L+R IDCT+
Sbjct: 34  VDAAFNYALDVDYDEIDPETERRLVRKIDCTI 65


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 105 IAEATLAFIVLYIFSFL 155
           +AEAT A ++L I SFL
Sbjct: 192 LAEATFADVLLTIISFL 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,795
Number of Sequences: 5004
Number of extensions: 10222
Number of successful extensions: 24
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)