Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I13
         (192 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0206 + 1487034-1489430                                           25   6.4  
04_03_0461 - 16165126-16165419,16165947-16166195,16168510-161686...    25   6.4  
04_03_0454 - 16071490-16071534,16071849-16071980,16072523-160727...    25   6.4  

>05_01_0206 + 1487034-1489430
          Length = 798

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 62  MRSTFTYDRLHPRPNSCS 9
           M++   YD LHP+PN  S
Sbjct: 552 MKNGALYDHLHPKPNGSS 569


>04_03_0461 -
           16165126-16165419,16165947-16166195,16168510-16168645,
           16171251-16171469,16172738-16173116,16173660-16173918,
           16176052-16176315
          Length = 599

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 37  RSYVKVERIFFVLLYRNQ*KCILSPKXXXXXXFSIFSPFYLRSLLVY--WFR 186
           R+Y +VE + ++L Y  + +CI+         F++    +L+ L  +  W++
Sbjct: 253 RTYKRVEMLHYMLEYGQEEECIVVLLDLAKLEFNLLQHVHLKELKAFSQWWK 304


>04_03_0454 -
           16071490-16071534,16071849-16071980,16072523-16072771,
           16075090-16075225,16077833-16078051,16079320-16079698,
           16080238-16080478
          Length = 466

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 37  RSYVKVERIFFVLLYRNQ*KCILSPKXXXXXXFSIFSPFYLRSLLVY--WFR 186
           R+Y +VE + ++L Y  + +CI+         F++    +L+ L  +  W++
Sbjct: 159 RTYKRVEMLHYMLEYGQEEECIVVLLDLAKLEFNLLQHVHLKELKAFSQWWK 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,314,458
Number of Sequences: 37544
Number of extensions: 53217
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)