Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I13
         (192 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    25   5.6  
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    25   5.6  
AC024792-6|AAF60686.2|  901|Caenorhabditis elegans Hypothetical ...    25   9.8  

>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
          protein C44E4.1a protein.
          Length = 2712

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 13 QEFGRGCNRSYVKVERIFFVLLYRNQ 90
          Q FGR   + ++K+ + F+  L +NQ
Sbjct: 13 QNFGRHSKQDFIKILKFFYWKLLKNQ 38


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
          protein C44E4.1c protein.
          Length = 2710

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 13 QEFGRGCNRSYVKVERIFFVLLYRNQ 90
          Q FGR   + ++K+ + F+  L +NQ
Sbjct: 13 QNFGRHSKQDFIKILKFFYWKLLKNQ 38


>AC024792-6|AAF60686.2|  901|Caenorhabditis elegans Hypothetical
           protein Y48G1A.1 protein.
          Length = 901

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 81  SKSIEMYSIAEATLAFIVLYIFSFLFEVVTGLL 179
           S  I M +I E TL F+    +SF  +V+ GLL
Sbjct: 547 SMHILMETITEFTLPFLYELFYSFEEKVLEGLL 579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,967,346
Number of Sequences: 27780
Number of extensions: 54779
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)