Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I12
(259 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 83 6e-18
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 81 2e-17
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 2.9
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 24 2.9
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 24 2.9
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 24 2.9
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 24 3.8
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 23 6.7
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 6.7
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 23 8.9
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 23 8.9
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 83.0 bits (196), Expect = 6e-18
Identities = 36/59 (61%), Positives = 45/59 (76%)
Frame = +1
Query: 76 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGF*GRVFEVSLADLQADSD 252
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ GR+ EVSLADLQ D +
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEE 78
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 81.4 bits (192), Expect = 2e-17
Identities = 35/59 (59%), Positives = 45/59 (76%)
Frame = +1
Query: 76 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGF*GRVFEVSLADLQADSD 252
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ GR+ EVSLADLQ D +
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEE 78
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 24.2 bits (50), Expect = 2.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 197 PSDAIFVPWVRLTRVVPTCLLVNMDGALTSYQ 102
PSD+ F W +L R+V + + + LT YQ
Sbjct: 1905 PSDSTFPLWAKLPRLVISEDVQGISQPLTVYQ 1936
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 24.2 bits (50), Expect = 2.9
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 46 SKGLYFYRPP 17
S+GLYFY PP
Sbjct: 137 SRGLYFYHPP 146
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 24.2 bits (50), Expect = 2.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 87 RINNLLLNTLLASFRKAFIFTDRHDQPSC 1
+I LLL L+ FRK+F R+D+ C
Sbjct: 189 QIGELLLTRLIVQFRKSF---QRNDKSMC 214
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 24.2 bits (50), Expect = 2.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 123 RRFNIVPVFTGERINNLLLNTLLASFRKAFIFTD 22
R N+V VF G+ + N LN + + +FT+
Sbjct: 172 RTENVVKVFQGKNVKNDSLNLRVRVWITGIVFTE 205
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 23.8 bits (49), Expect = 3.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 177 SLGAIDKGGAHLSLGEHGRRFNIVPVFT 94
+LGAID G LGE F + P F+
Sbjct: 858 NLGAIDSEGVLTKLGEQMSLFPLSPRFS 885
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 23.0 bits (47), Expect = 6.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -1
Query: 259 FPHHYQPGDQQGRPQXH 209
FP H++PG+ P H
Sbjct: 197 FPAHHEPGEHMPPPPMH 213
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 179 VPWVRLTRVVPTCLLVNMDGALTSYQ 102
V +RL R P L+N D TSY+
Sbjct: 222 VSLIRLERTQPILHLMNFDDYSTSYE 247
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 22.6 bits (46), Expect = 8.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 66 NTLLASFRKAFIFTDRHDQ 10
NT+LAS KAF D ++
Sbjct: 330 NTMLASLSKAFFIFDNQNE 348
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 22.6 bits (46), Expect = 8.9
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = -3
Query: 170 VRLTRVVPTCLLVNMDGALTSYQSLRVK 87
+ L +P C ++DG + Y S +K
Sbjct: 291 IALCTALPICACASVDGTVALYDSASLK 318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 956,733
Number of Sequences: 5004
Number of extensions: 15992
Number of successful extensions: 43
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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