Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I12
(259 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 95 9e-21
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 94 1e-20
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 94 2e-20
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 29 0.68
09_02_0568 + 10748227-10748434,10749004-10749398 27 2.7
08_01_1065 - 10868890-10869999,10870925-10871004,10871224-108712... 26 3.6
02_05_0952 + 33022742-33023125 26 4.8
05_05_0263 - 23673014-23673697,23673772-23674188 25 6.3
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 25 6.3
01_06_0454 - 29506637-29508175 25 6.3
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 25 8.4
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 25 8.4
10_06_0125 + 11020726-11020785,11021872-11022198,11022589-11023041 25 8.4
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 94.7 bits (225), Expect = 9e-21
Identities = 44/58 (75%), Positives = 48/58 (82%)
Frame = +1
Query: 79 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGF*GRVFEVSLADLQADSD 252
VDPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEG RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED 78
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 94.3 bits (224), Expect = 1e-20
Identities = 43/58 (74%), Positives = 48/58 (82%)
Frame = +1
Query: 79 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGF*GRVFEVSLADLQADSD 252
VDPF +KDWYD+KAPS+F R +G TLV+RTQGTKIASEG RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED 78
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 93.9 bits (223), Expect = 2e-20
Identities = 42/58 (72%), Positives = 50/58 (86%)
Frame = +1
Query: 79 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGF*GRVFEVSLADLQADSD 252
VDPF++KDWYD+KAP++F+ R +G TLV+RTQGTKIASEG RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED 78
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 GTMLKRRPCSPRDKWAPPLSIAP 172
G + R PC PRDK+ P S+ P
Sbjct: 206 GAYIVRLPCGPRDKYLPKESLWP 228
>09_02_0568 + 10748227-10748434,10749004-10749398
Length = 200
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 107 TMLKRRPCSPRDKWAPPLSIAPREQKS 187
T+ KR+P RDK P++ AP +K+
Sbjct: 163 TVAKRKPLQGRDKVGIPITPAPSNEKT 189
>08_01_1065 -
10868890-10869999,10870925-10871004,10871224-10871283,
10871490-10871678,10871931-10872092,10872989-10873100
Length = 570
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = -2
Query: 255 RITISLEISKGDLKXTPLKTLRCDFCSLGAIDKGGAHLSLGEHGRRFNIVPVFTGERINN 76
R+ +++ I K + P DF +G GGA S+G + +TG NN
Sbjct: 378 RVGMTVNIGKAPMIELPFGVPVDDFL-VGETAYGGAGPSIGAPSNDAAVAYAYTGALNNN 436
Query: 75 LLLNTLLA 52
+ +L+A
Sbjct: 437 TAVGSLMA 444
>02_05_0952 + 33022742-33023125
Length = 127
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 207 PLKTLRCDFCSLGAIDKGGAHLSLGEH-GRR 118
P T RC +G + KG HLS+ GRR
Sbjct: 60 PQLTCRCRRRFMGGVGKGAPHLSMARRKGRR 90
>05_05_0263 - 23673014-23673697,23673772-23674188
Length = 366
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 125 PCSPRDKWAPPLSIAPRE 178
PCS KW PP + A E
Sbjct: 323 PCSDNGKWLPPAAAAAAE 340
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 168 AIDKGGAHLSLGEHG-RRFNIVPVFTGERINNLLLNTLLA 52
A+D GG S GE G RR N++P N L + LA
Sbjct: 127 AVDGGGELSSAGEGGQRRVNLLPTKILSAYENHLFSQALA 166
>01_06_0454 - 29506637-29508175
Length = 512
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 150 AHLSLGEHGRRFNIVPVFTGERINNLLLNTLLASFR 43
AH G G RF + V G+R+ +L + A R
Sbjct: 21 AHRLCGAGGDRFEVAVVEAGDRVGGRILTSEFAGHR 56
>12_01_0063 -
535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 110 MLKRRPCSPRDKWAPPLSIAP 172
++K PC+ ++ W P S+AP
Sbjct: 125 VIKISPCARKECWIDPFSMAP 145
>11_01_0061 -
456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 110 MLKRRPCSPRDKWAPPLSIAP 172
++K PC+ ++ W P S+AP
Sbjct: 120 VIKISPCARKECWIDPFSMAP 140
>10_06_0125 + 11020726-11020785,11021872-11022198,11022589-11023041
Length = 279
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 156 GGAHLSLGEHGRRFNIVPVFTGERINNLLLNTLLASFRKAF 34
G + LG H V TG +I N + LLAS+ + F
Sbjct: 199 GLVDIMLGAHIPGVRATEVLTGAKIFNAAITPLLASWTERF 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,764,045
Number of Sequences: 37544
Number of extensions: 121902
Number of successful extensions: 309
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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