Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I12
         (259 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   2.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   2.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    20   5.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    19   9.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    19   9.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    19   9.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    19   9.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    19   9.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    19   9.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   9.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   9.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   9.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   9.8  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -3

Query: 200 KPSDAIFVPWVR--LTRVVPTCLLVNM-DGALTSYQSLRVKG 84
           KPS     PWVR    R +P  LL+ + D  L    + ++ G
Sbjct: 326 KPSTHKMAPWVRKIFIRRLPKLLLMRVPDDLLNDLAAHKMHG 367


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 126 HVHQETSGHHPCQSHP 173
           H HQ    HHP Q HP
Sbjct: 317 HPHQ----HHPSQYHP 328



 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 117 SAVHVHQETSGHHPCQSH 170
           S  H H+ +S HH   +H
Sbjct: 324 SQYHPHRGSSPHHQHGNH 341


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -2

Query: 201 KTLRCDFCSLGAIDKGGAHLSLGEH 127
           K  +C+ CS   ++K   +  L  H
Sbjct: 15  KPFKCEKCSYSCVNKSMLNSHLKSH 39


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 222 DLKXTPLKTLRCDFCSLGAIDKG 154
           DL+ TP K  + D     + D+G
Sbjct: 60  DLRITPNKLWKPDILMYNSADEG 82


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 222 DLKXTPLKTLRCDFCSLGAIDKG 154
           DL+ TP K  + D     + D+G
Sbjct: 60  DLRITPNKLWKPDILMYNSADEG 82


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 222 DLKXTPLKTLRCDFCSLGAIDKG 154
           DL+ TP K  + D     + D+G
Sbjct: 60  DLRITPNKLWKPDILMYNSADEG 82


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 222 DLKXTPLKTLRCDFCSLGAIDKG 154
           DL+ TP K  + D     + D+G
Sbjct: 60  DLRITPNKLWKPDILMYNSADEG 82


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 222 DLKXTPLKTLRCDFCSLGAIDKG 154
           DL+ TP K  + D     + D+G
Sbjct: 60  DLRITPNKLWKPDILMYNSADEG 82


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 222 DLKXTPLKTLRCDFCSLGAIDKG 154
           DL+ TP K  + D     + D+G
Sbjct: 60  DLRITPNKLWKPDILMYNSADEG 82


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 211 HAPKNPQMRF 182
           HAPK  ++RF
Sbjct: 344 HAPKQTEVRF 353


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 211 HAPKNPQMRF 182
           HAPK  ++RF
Sbjct: 344 HAPKQTEVRF 353


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 222 DLKXTPLKTLRCDFCSLGAIDKG 154
           DL+ TP K  + D     + D+G
Sbjct: 128 DLRITPNKLWKPDILMYNSADEG 150


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 222 DLKXTPLKTLRCDFCSLGAIDKG 154
           DL+ TP K  + D     + D+G
Sbjct: 128 DLRITPNKLWKPDILMYNSADEG 150


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = -1

Query: 256 PHHYQPGDQQGRPQXHAPKNPQMR 185
           PH      Q   PQ  A   PQ +
Sbjct: 810 PHQQLHHHQSTHPQAQAQAQPQQQ 833


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,233
Number of Sequences: 438
Number of extensions: 1057
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)