Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I11
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 93 4e-20
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 31 0.29
08_01_0907 + 8949102-8949160,8949662-8949842,8951816-8951941,895... 27 2.7
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781... 27 4.7
12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61... 26 6.2
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 26 6.2
05_07_0100 + 27679280-27680320 26 8.3
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 93.5 bits (222), Expect = 4e-20
Identities = 51/103 (49%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Frame = +2
Query: 32 VPDNEPT-ITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPK 208
V + P+ + VQ +GLAV+KI+KHC E + + + G LLGL V + LE+TNCFPFP
Sbjct: 24 VTEEAPSPLRVVQMEGLAVLKIIKHCEEFAPA---LVTGQLLGLDVGSVLEVTNCFPFPM 80
Query: 209 HDDT----MDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNF 325
+D D YQL+MMR LR VNVD+ VGWYQS +G+F
Sbjct: 81 REDDEEADADGANYQLEMMRCLREVNVDNNTVGWYQSCLLGSF 123
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +2
Query: 50 TITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDE 229
T+ V L ++ IV H + + + G LLG +++TN + P +D D
Sbjct: 13 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDP 72
Query: 230 EEYQLD 247
+ LD
Sbjct: 73 RIWFLD 78
>08_01_0907 +
8949102-8949160,8949662-8949842,8951816-8951941,
8952082-8952092,8952237-8952360,8952447-8952546,
8952807-8952849,8953033-8953153
Length = 254
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 5 LDEGGTSRRVPDNEPTITYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLE 181
LD+G R+ P +T + L + + HC + +EV GA+LG + +E
Sbjct: 184 LDDGRVFLRLGTMGPVLTVIGTQKLQLPRQEWHCEFVIPNTIEVVHGAVLGTMASLVME 242
>06_03_0025 -
15577231-15577420,15577682-15577813,15578025-15578173,
15579012-15579071,15593208-15593297,15593604-15593871,
15594517-15594608,15595355-15595441,15597333-15597440,
15597709-15597822,15598253-15598420,15599442-15599579,
15599699-15599908,15600986-15601237,15601965-15602111,
15603327-15603443
Length = 773
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 8 DEGGTSRRVPDNEPTI-TYVQCDGLAVMKIVKHCH 109
D+GG S RVP E T +YV+ ++ +K CH
Sbjct: 20 DKGGVSSRVPLPEDTCDSYVEQKYRCYIRTLKGCH 54
>12_01_0072 +
609254-609722,610355-610421,610652-610745,610984-611127
Length = 257
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 210 CFGKGKQLVISKRFSTTKPSKAP*ATSILLHDSSWQCLTIFITA 79
C +SK S T + AP + L SSW LT+ I A
Sbjct: 66 CSASPSHTPVSKPSSATGETAAPQSNLCALRCSSWDFLTLAIAA 109
>01_06_1507 - 37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 203 ERGSNWLSLNDSPQLNPVRHLEPPPY 126
+ G N + +P P R+ +PPPY
Sbjct: 975 QSGGNSYQSHSAPSAGPGRYAQPPPY 1000
>05_07_0100 + 27679280-27680320
Length = 346
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 182 SLNDSPQLNPVRHLEPPPYYCMILHGSA 99
S SP +PV PPPY+ M +H SA
Sbjct: 138 SKRPSPSPSPV---PPPPYFAMPIHPSA 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,691,296
Number of Sequences: 37544
Number of extensions: 228490
Number of successful extensions: 516
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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