Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I11
(331 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic in... 67 2e-12
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 39 7e-04
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 1.4
Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical pr... 27 4.2
X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger pro... 27 4.2
Z78546-5|CAO79773.1| 962|Caenorhabditis elegans Hypothetical pr... 26 5.5
Z78546-4|CAB01771.3| 920|Caenorhabditis elegans Hypothetical pr... 26 5.5
Z67738-5|CAA91547.1| 484|Caenorhabditis elegans Hypothetical pr... 26 5.5
Z67735-4|CAA91533.1| 484|Caenorhabditis elegans Hypothetical pr... 26 5.5
AF022983-3|AAB69942.2| 399|Caenorhabditis elegans Nuclear hormo... 26 5.5
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p... 26 7.3
U29612-11|AAO61438.1| 523|Caenorhabditis elegans P21-activated ... 26 7.3
U29612-9|AAL65775.1| 569|Caenorhabditis elegans P21-activated k... 26 7.3
D83215-1|BAA11844.1| 569|Caenorhabditis elegans protein kinase ... 26 7.3
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ... 26 7.3
AC024775-5|AAK68457.3| 259|Caenorhabditis elegans Hypothetical ... 26 7.3
U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n... 25 9.7
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 25 9.7
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 25 9.7
>AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic
initiation factor protein3.H protein.
Length = 365
Score = 67.3 bits (157), Expect = 2e-12
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 19/118 (16%)
Frame = +2
Query: 23 SRRVPDNEPTITYVQCDGLAVMKIVKHCHEESCSNM-----EVAQGALLGLVV--ENRLE 181
S V P++ ++ D L VMKIVKH E + + + G L GLV ++RLE
Sbjct: 2 STAVTITAPSVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLE 61
Query: 182 ITNCFPFPKHDDTMDEE-----EYQ-------LDMMRRLRRVNVDHFHVGWYQSADVG 319
ITNCFP +++ MD++ +Y+ LDM+R+ R +N+D+ VG+YQS G
Sbjct: 62 ITNCFPTVRNEPVMDDDANAAQQYEEQKQHEMLDMLRKFRTMNIDYEIVGFYQSHQFG 119
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 39.1 bits (87), Expect = 7e-04
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 122 SNMEVAQGALLGLVVENRLEITNCFPFP---KHDDTMDEEEYQLDMMRRLRRVNVDHFHV 292
+ E G L+G + +++TNCF P +DD ++++ M+ L++ + + V
Sbjct: 32 TGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPV 91
Query: 293 GWY 301
GW+
Sbjct: 92 GWF 94
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Frame = +2
Query: 65 QCDGLAVMKIVKHCHEESCS------NME-VAQ--GALLGLVVENRLEITNCFPF 202
QCD AV+K +K EE CS N+E +A+ G +V ++ +++TNC F
Sbjct: 3521 QCDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGITADIVEQSVIQLTNCLGF 3575
>Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical
protein F52E10.1 protein.
Length = 1201
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 131 EVAQGALLGLVVENRLEITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNVDHFHVGWY 301
+V G + + ++ + T PFPKH T ++ D + +L R H +VG Y
Sbjct: 89 KVCDGIHSSIKLVSQRDQTGPAPFPKHKLTCAHCDWSFDNVMKLVRHRGVHKNVGVY 145
>X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger
protein protein.
Length = 1203
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 131 EVAQGALLGLVVENRLEITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNVDHFHVGWY 301
+V G + + ++ + T PFPKH T ++ D + +L R H +VG Y
Sbjct: 89 KVCDGIHSSIKLVSQRDQTGPAPFPKHKLTCAHCDWSFDNVMKLVRHRGVHKNVGVY 145
>Z78546-5|CAO79773.1| 962|Caenorhabditis elegans Hypothetical
protein T21H8.1b protein.
Length = 962
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 236 TPLHPLCHHASERGSNWLSLNDSPQLNPVRHLEPP 132
TP + L RG++W+SL+ SP ++ V E P
Sbjct: 140 TPFNQL-QSRDARGASWISLSPSPSMSTVSCPEYP 173
>Z78546-4|CAB01771.3| 920|Caenorhabditis elegans Hypothetical
protein T21H8.1a protein.
Length = 920
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 236 TPLHPLCHHASERGSNWLSLNDSPQLNPVRHLEPP 132
TP + L RG++W+SL+ SP ++ V E P
Sbjct: 140 TPFNQL-QSRDARGASWISLSPSPSMSTVSCPEYP 173
>Z67738-5|CAA91547.1| 484|Caenorhabditis elegans Hypothetical
protein W03G11.4 protein.
Length = 484
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 194 FPFPKHDDTMDEEEYQLDMMRRLRRVNVDHFHVG 295
F FP + +E +L + R+L NVDH +G
Sbjct: 381 FTFPYFESVDNEHNKRLTLERQLNDDNVDHEEMG 414
>Z67735-4|CAA91533.1| 484|Caenorhabditis elegans Hypothetical
protein W03G11.4 protein.
Length = 484
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 194 FPFPKHDDTMDEEEYQLDMMRRLRRVNVDHFHVG 295
F FP + +E +L + R+L NVDH +G
Sbjct: 381 FTFPYFESVDNEHNKRLTLERQLNDDNVDHEEMG 414
>AF022983-3|AAB69942.2| 399|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 270 protein.
Length = 399
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/47 (23%), Positives = 19/47 (40%)
Frame = -3
Query: 266 CGAFASCPIGTPLHPLCHHASERGSNWLSLNDSPQLNPVRHLEPPPY 126
CG +CP+ + C H + + + S + + PPPY
Sbjct: 106 CGRKGACPVVSEFRSTCRHCRFKKCFDVGMKASAVNTCIANPSPPPY 152
>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 200 FPKHDDTMDEEEYQLDMM 253
FP+ DD++D EY ++MM
Sbjct: 12 FPEFDDSIDRIEYGIEMM 29
>U29612-11|AAO61438.1| 523|Caenorhabditis elegans P21-activated
kinase family protein1, isoform c protein.
Length = 523
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -3
Query: 197 GSNWLS--LNDSPQLNPVRHLEPPPY 126
G WL +ND+P P L+P PY
Sbjct: 84 GQKWLQYDMNDAPSRTPSYGLKPQPY 109
>U29612-9|AAL65775.1| 569|Caenorhabditis elegans P21-activated
kinase family protein1, isoform b protein.
Length = 569
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -3
Query: 197 GSNWLS--LNDSPQLNPVRHLEPPPY 126
G WL +ND+P P L+P PY
Sbjct: 130 GQKWLQYDMNDAPSRTPSYGLKPQPY 155
>D83215-1|BAA11844.1| 569|Caenorhabditis elegans protein kinase
protein.
Length = 569
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -3
Query: 197 GSNWLS--LNDSPQLNPVRHLEPPPY 126
G WL +ND+P P L+P PY
Sbjct: 130 GQKWLQYDMNDAPSRTPSYGLKPQPY 155
>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 200 FPKHDDTMDEEEYQLDMM 253
FP+ DD++D EY ++MM
Sbjct: 12 FPEFDDSIDRIEYGIEMM 29
>AC024775-5|AAK68457.3| 259|Caenorhabditis elegans Hypothetical
protein Y41D4A.7 protein.
Length = 259
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 194 FPFPKHDDTMDEEEYQL--DMMRRLRRVNVDHFHVGWYQSA 310
F + ++ EE QL D + RL ++ + ++ WY+SA
Sbjct: 150 FQYSDPEEGTPEERKQLCYDWLDRLHEISKKYCYLAWYESA 190
>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
nucleotide transhydrogenaseprotein 1 protein.
Length = 1041
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +2
Query: 134 VAQGALLGLVVENRLEITN 190
VA G+L+GL + NR+++T+
Sbjct: 635 VAMGSLIGLGIANRIKVTD 653
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 221 LCHHASERG-SNWLSLNDSPQLNPVRHLEPPPY 126
+C++AS S WLS +++ + PV E PY
Sbjct: 1596 VCNYASRNDKSYWLSTSEAIPMMPVNEREIEPY 1628
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 221 LCHHASERG-SNWLSLNDSPQLNPVRHLEPPPY 126
+C++AS S WLS +++ + PV E PY
Sbjct: 1597 VCNYASRNDKSYWLSTSEAIPMMPVNEREIEPY 1629
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,700,379
Number of Sequences: 27780
Number of extensions: 182481
Number of successful extensions: 478
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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