Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I09
         (194 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    63   4e-12
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    63   4e-12
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    23   4.2  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    22   9.7  
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...    22   9.7  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 63.3 bits (147), Expect = 4e-12
 Identities = 27/39 (69%), Positives = 31/39 (79%)
 Frame = +1

Query: 76  MGFVKVVKNKQYFKRYQVKF*RRREGKTDYYARKRLVVQ 192
           M F+K VK+  YF RYQ K+ RRREGKTDYYARKRL+ Q
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQ 39


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 63.3 bits (147), Expect = 4e-12
 Identities = 27/39 (69%), Positives = 31/39 (79%)
 Frame = +1

Query: 76  MGFVKVVKNKQYFKRYQVKF*RRREGKTDYYARKRLVVQ 192
           M F+K VK+  YF RYQ K+ RRREGKTDYYARKRL+ Q
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQ 39


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 51  SKLSAPCPQTPRADIPH 1
           S LSAP  + P  DIPH
Sbjct: 56  SGLSAPVYEVPYEDIPH 72


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 53  PQNYPHRAHRRLVPISR 3
           P N+P R    L+PISR
Sbjct: 307 PLNFPPRDRPPLIPISR 323


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 97  LLLSRIPFSKIFLE-XLKTIRTVPTDASCRY 8
           LL+ R+PFS+I  E   + +    TD   R+
Sbjct: 41  LLIQRLPFSRIVREISSEFVANFSTDVGLRW 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 766,065
Number of Sequences: 5004
Number of extensions: 10473
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)