Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I09
         (194 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...    54   1e-08
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...    52   6e-08
12_02_0997 - 25121029-25121126,25121365-25121405,25121565-251218...    29   0.69 
12_02_0715 - 22453747-22453935,22454347-22454457,22454514-224545...    26   3.7  
03_05_0283 - 22694137-22694952                                         26   3.7  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 26/38 (68%), Positives = 28/38 (73%)
 Frame = +1

Query: 79  GFVKVVKNKQYFKRYQVKF*RRREGKTDYYARKRLVVQ 192
           GFVK  K   YFKR+QVKF RRR+GKTDY AR RL  Q
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQ 40


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score = 52.0 bits (119), Expect = 6e-08
 Identities = 25/38 (65%), Positives = 27/38 (71%)
 Frame = +1

Query: 79  GFVKVVKNKQYFKRYQVKF*RRREGKTDYYARKRLVVQ 192
           GFVK  K   Y KR+QVKF RRR+GKTDY AR RL  Q
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQ 40


>12_02_0997 -
           25121029-25121126,25121365-25121405,25121565-25121805,
           25121884-25121946,25122719-25122852,25122904-25123006,
           25123079-25123281,25123382-25123468,25123886-25124014,
           25124241-25124315,25124731-25124816,25124926-25125162
          Length = 498

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 9   YRHEASVGTVRIVLRXSRNILENGIRESSKEQAVLQAVPGQI 134
           YR++A +    + L   +++LE+G  ++     +LQ  PG I
Sbjct: 320 YRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILQLHPGAI 361


>12_02_0715 -
           22453747-22453935,22454347-22454457,22454514-22454572,
           22454893-22455067,22455255-22455307,22455670-22455739,
           22457044-22457218,22457639-22457703,22458196-22460826
          Length = 1175

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 8   ISARGVCGHGADSFEVFQE 64
           IS    CGHG  + E+F+E
Sbjct: 216 ISGHAQCGHGEHALEIFEE 234


>03_05_0283 - 22694137-22694952
          Length = 271

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 96  YYFHESHFLKYSWXTSKLSAPCPQTPR 16
           Y     H L YS+ + K+S PC  T R
Sbjct: 118 YAISNQHSLMYSFCSGKVSYPCSDTVR 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,066,567
Number of Sequences: 37544
Number of extensions: 69647
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)