Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I09
         (194 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   0.19 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    20   3.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    19   7.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    18   9.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                18   9.4  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 0.19
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 38  ADSFEVFQEYFRKWDS 85
           ADSFE  +E FR+W S
Sbjct: 443 ADSFEDAKEKFRRWVS 458


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 94  LLSRIPFSKIF 62
           + +R+PF KIF
Sbjct: 240 IFNRVPFDKIF 250


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -2

Query: 184 RGVCEHSSQFFPHDASK 134
           R  C+   +FFP D  +
Sbjct: 128 RSSCDIDVEFFPFDEQR 144


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -2

Query: 178 VCEHSSQFFPHD 143
           VCE+   ++P+D
Sbjct: 158 VCEYDHTWWPYD 169


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 169 HSSQFFPHDAS 137
           H SQ+ PH  S
Sbjct: 322 HPSQYHPHRGS 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,943
Number of Sequences: 438
Number of extensions: 776
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2541420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)