Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I06
(300 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 79 1e-16
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 77 7e-16
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 27 0.59
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 27 0.78
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 2.4
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 2.4
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 2.4
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 3.1
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 4.2
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 24 4.2
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 24 4.2
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 4.2
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 24 4.2
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 24 4.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 5.5
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 23 7.3
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 23 7.3
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 23 7.3
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 23 9.6
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 23 9.6
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 79.4 bits (187), Expect = 1e-16
Identities = 39/69 (56%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = +2
Query: 29 DVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERK 205
+ V FG +T+FGGG+STGFALIYD+ + KKFEP +RL R G E ++ R+QRK+RK
Sbjct: 53 ECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRK 112
Query: 206 NRMKNVRGT 232
NR K V GT
Sbjct: 113 NRGKKVFGT 121
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 76.6 bits (180), Expect = 7e-16
Identities = 37/67 (55%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Frame = +2
Query: 35 VFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNR 211
V FG +T++GGG++TGFALIYD ++ KKFEP +RL R G E ++ R+QRK+RKNR
Sbjct: 55 VQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNR 114
Query: 212 MKNVRGT 232
K V GT
Sbjct: 115 GKKVFGT 121
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 27.1 bits (57), Expect = 0.59
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 8 GIRARGPDVVFVFGFKTNFGGGKSTGFA 91
G+RA PD +F FGF N+ K+ GF+
Sbjct: 402 GVRAVYPDRMFAFGFTGNY-DFKAAGFS 428
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 26.6 bits (56), Expect = 0.78
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 122 KFEPKHRLARHGLYEKKRPTRKQRKERKN 208
K+ P R G + +KR RK++ E+KN
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKN 567
>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 133
Score = 25.0 bits (52), Expect = 2.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 235 LGTSYILHSVLTFLTLFACRPLLFIQAVTSESVFWL 128
L TS+ S+L L + PLLF+ + S S + L
Sbjct: 17 LNTSFSFSSLLCILCFYKDGPLLFLYSPLSASYYCL 52
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 25.0 bits (52), Expect = 2.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 122 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKNVR 226
+F KH L RHG EKKR K R++ K+ R
Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGR 91
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 2.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 144 SLCFGSNFFAKSSVS*IKANPVDLP 70
S CF +N F+KSS+ I +N +P
Sbjct: 766 SFCFINNLFSKSSLKAISSNDSIVP 790
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 3.1
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = +2
Query: 164 EKKRPTRKQRKERKNRMKNVR 226
+KK+ + +K++KN+ KN++
Sbjct: 437 KKKKKKKNNKKKKKNKRKNIK 457
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 24.2 bits (50), Expect = 4.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 161 TGRDERVCVLAQTSLLSLACRRLKQ 87
+G DER V L+ CRRLKQ
Sbjct: 519 SGTDERCLVCLSNFELNDECRRLKQ 543
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 24.2 bits (50), Expect = 4.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 129 SNFFAKSSVS*IKANPVDLPPPKFVLKPNTKTTS 28
SN+ A S V + N +DLPPP + + K S
Sbjct: 135 SNWRADSGVVQVIDNIIDLPPPALEILSSEKDFS 168
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 24.2 bits (50), Expect = 4.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +2
Query: 164 EKKRPTRKQRKERKNRMKNVRGT 232
E+ +P ++ +E +NR+ +RGT
Sbjct: 90 ERLKPQDERTQEERNRVDEIRGT 112
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.2 bits (50), Expect = 4.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 23 GPDVVFVFGFKTNFGGGKSTGFALIYD-TLDLAKK 124
G VV + NF G S G A +YD +D A K
Sbjct: 1462 GGRVVILGSTGRNFAAGMSGGIAYVYDMQMDFAGK 1496
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 200 VPYAVCVSASSFHTGRDERVCVLAQTSL 117
+ A+ V A H G+D+ C LA+ L
Sbjct: 75 IDVALAVGADGVHIGQDDMDCALARKIL 102
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 90 ANPVDLPPPKFVLKPNTKTTSGPR 19
+NPV LP + + P+ T S PR
Sbjct: 574 SNPVSLPNQQKSVNPSLMTVSSPR 597
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 84 PVDLPPPKFVLKPNTKTTSGPRARIP 7
P D PP + KP + + + P AR+P
Sbjct: 987 PKDHPPSAPLSKPVSTSPAAPLARVP 1012
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 123 FFAKSSVS*IKANPVDLPPPKFVLKPNTK 37
++++++ AN V PPP+ PN+K
Sbjct: 477 YYSQANPQMYYANQVSAPPPQGSFDPNSK 505
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 270 HHFLAAAPTLDFLVPRTFFILFL 202
H L P LDF++ T +LF+
Sbjct: 310 HDSLTQFPNLDFILKTTALVLFI 332
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 38 FVFGFKTNFGGGKSTGFALI 97
F+FG TN+ G + G+A I
Sbjct: 232 FIFGDFTNYSGWSNMGWAFI 251
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 253 RTYFRFLGTSYILHSVLTFL 194
R YF F+GTS + SV F+
Sbjct: 169 RDYFEFIGTSTLSPSVEEFV 188
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 101 DTLDLAKKFEPKHRLARHGLYEK 169
D + L PKHRL HG E+
Sbjct: 498 DLIKLLLNRNPKHRLGAHGDVEE 520
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,226,698
Number of Sequences: 5004
Number of extensions: 22652
Number of successful extensions: 67
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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