Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I06
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 98 1e-21
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 98 1e-21
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 69 8e-17
06_03_1139 + 27925970-27925985,27926427-27927079 29 0.89
12_02_0665 + 21670956-21671834,21672563-21672583 27 2.1
08_02_1543 + 27783063-27783182,27784321-27784485,27784577-277846... 27 3.6
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 27 3.6
02_01_0412 - 3005600-3007759 27 3.6
01_04_0061 + 15555096-15555428,15555768-15555775,15557117-15557495 27 3.6
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687... 26 4.7
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72... 26 4.7
04_04_0078 + 22573413-22573554,22573637-22573959,22574681-225753... 26 4.7
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065... 26 6.3
04_04_1214 - 31798271-31799134,31799218-31799301,31799469-317996... 26 6.3
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910... 26 6.3
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 26 6.3
02_04_0583 + 24078766-24079800,24080585-24081643 26 6.3
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 25 8.3
01_01_1216 - 9827190-9827531 25 8.3
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 98.3 bits (234), Expect = 1e-21
Identities = 44/65 (67%), Positives = 52/65 (80%)
Frame = +2
Query: 35 VFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRM 214
+FVF F+T+FGGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR
Sbjct: 61 IFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRA 120
Query: 215 KNVRG 229
K +RG
Sbjct: 121 KKIRG 125
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 98.3 bits (234), Expect = 1e-21
Identities = 44/65 (67%), Positives = 52/65 (80%)
Frame = +2
Query: 35 VFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRM 214
+FVF F+T+FGGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR
Sbjct: 61 IFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRA 120
Query: 215 KNVRG 229
K +RG
Sbjct: 121 KKIRG 125
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 68.5 bits (160), Expect(2) = 8e-17
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +2
Query: 35 VFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLAR 151
+FVF F+T+FGGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 61 IFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 33.9 bits (74), Expect(2) = 8e-17
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 152 HGLYEKKRPTRKQRKERKNRMKNVRG 229
+GL K +RKQ KERKNR K +RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153
>06_03_1139 + 27925970-27925985,27926427-27927079
Length = 222
Score = 28.7 bits (61), Expect = 0.89
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -3
Query: 277 TVTSLLGGRTYFRFLGTSYILHSVLTFLTLFACRPLLFIQAVTSESVFW 131
TV L GRT+ R + + + ++L +L+L+ L + S+S+ W
Sbjct: 16 TVREALQGRTWIRDISGALGIQAILEYLSLWTSLQSLDALSEESDSIIW 64
>12_02_0665 + 21670956-21671834,21672563-21672583
Length = 299
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 75 LPPPKFVLKPNTKTTSGP 22
LPPP+F L P KT S P
Sbjct: 53 LPPPRFSLSPIPKTLSSP 70
>08_02_1543 +
27783063-27783182,27784321-27784485,27784577-27784686,
27784771-27784876,27784952-27785050,27785450-27786607
Length = 585
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 298 FYLLTILTVTSLLGGRTYFRFLGTSYILHSVLTFLTLFACRPLLFIQAVTS 146
FY T L +T L+ G YF ++ + VLT T+ C L F + + S
Sbjct: 531 FYFFTKLQITKLVSGILYFGYMLLASFSFFVLTG-TIGFCACLWFTRLIYS 580
>02_01_0417 -
3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 221 HSSFCSYVPYAVCVSASSF 165
++SF Y+P C+S+SSF
Sbjct: 187 NNSFTGYIPSTFCISSSSF 205
>02_01_0412 - 3005600-3007759
Length = 719
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 221 HSSFCSYVPYAVCVSASSF 165
++SF Y+P C+S+SSF
Sbjct: 188 NNSFTGYIPSTFCISSSSF 206
>01_04_0061 + 15555096-15555428,15555768-15555775,15557117-15557495
Length = 239
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 59 NFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLY-EKKRPTRKQRKERKNR 211
NFGGG + L+Y L+ +++++ G Y +++ ERK +
Sbjct: 100 NFGGGAAVAVGLLYRVLE-ESSHNKRNKISESGAYTSSSNQEIEEKTERKEK 150
>09_06_0252 +
21867179-21867283,21868362-21868526,21868621-21868730,
21868802-21868904,21868998-21869110,21869204-21869357,
21869476-21870633
Length = 635
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 298 FYLLTILTVTSLLGGRTYFRFLGTSYILHSVLTFLTLFACRPLLFIQAVTS 146
FY T L +T L+ G YF ++ + + VLT T+ C F + + S
Sbjct: 581 FYFFTKLQITKLVSGILYFGYMLLASLAFFVLTG-TIGFCACFWFTRLIYS 630
>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
725738-725840,726106-726264,726728-726846,726891-727004,
727119-727277,727404-727451,728464-728640,729064-729116,
729549-729661,729793-729873,729966-730081,730786-730905,
732321-732429,732593-732770,732852-732920,733102-733233,
733657-733766,733843-734003,734081-734171,734258-734355,
734499-734619,734732-734892,734985-735090,735142-735236,
735828-735852,736008-736084,736196-736282,736372-736421,
736558-736639,736735-736795,737064-737116,737206-737395,
737472-737595,737860-737962,738064-738156,740344-740422,
740508-740584,740915-741043,742614-742731,742816-742913,
743457-743546,744998-745123,745238-745351,745488-745611,
745865-746019,746104-746201,746357-746600
Length = 1926
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -3
Query: 292 LLTILTVTSLLGGRTYFRFLGTSYILHSVLTFLTLFACRPLLFIQAVTSESVF 134
++T+LTV L GR Y G Y + FL A L Q + +F
Sbjct: 1496 MMTVLTVYIFLYGRVYLALSGLDYEISRQFRFLGNTALDAALNAQFLVQIGIF 1548
>04_04_0078 +
22573413-22573554,22573637-22573959,22574681-22575313,
22575383-22575838
Length = 517
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 14 RARGPDVVFVFGFKTNFGGGKSTGFAL 94
RA G V V G F GG TGFA+
Sbjct: 108 RAMGRQAVMVMGGALFFAGGAVTGFAV 134
>12_02_0995 +
25104303-25104486,25105164-25105275,25106466-25106554,
25106635-25106703,25106784-25106913,25107073-25107231,
25107364-25107736,25108070-25108182,25108429-25108624,
25108855-25109288,25109360-25109495,25109668-25111086
Length = 1137
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 149 RHGLYEKKRPTRKQRKERKNRMKNVRG 229
R ++KR +KQ K++KN KN +G
Sbjct: 462 RSAAEKEKRIRKKQAKQKKNSRKNNKG 488
>04_04_1214 -
31798271-31799134,31799218-31799301,31799469-31799614,
31799658-31799739
Length = 391
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 83 GFALIYDTLDLAKKFEPKHRL 145
GF L D L+ AK F+ KH+L
Sbjct: 129 GFVLGKDALERAKSFDEKHQL 149
>03_06_0520 -
34487664-34488274,34488785-34488974,34489585-34491045,
34491149-34491163
Length = 758
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 224 VHSSFCSYVPYAVCVSASSFHTGRDERVCVLAQT 123
VHSSF S + VSAS FH G E + + T
Sbjct: 479 VHSSFGSRLSGEQKVSASPFHCGVYEAITISDHT 512
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +2
Query: 134 KHRLARHGLYEKKRPTRKQRKERKNRMKNVR 226
K + +HGL +K++ +++ + KN++ N R
Sbjct: 781 KLKKRKHGLLKKQKTSKRNSRGSKNKISNSR 811
>02_04_0583 + 24078766-24079800,24080585-24081643
Length = 697
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 90 ANPVDLPPPKFVLKPNTK 37
ANPV LPPP+ P K
Sbjct: 219 ANPVALPPPRLAALPQRK 236
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 155 GLYEKKRPTRKQRKERKNR 211
G+YE++R R+Q KER+ +
Sbjct: 999 GVYERERNMRQQEKERRKQ 1017
>01_01_1216 - 9827190-9827531
Length = 113
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 149 RHGLYEKKRPTRKQRKERKNRMKN 220
+ L +KK+ +K++K++K MKN
Sbjct: 40 QEALSKKKKKKKKKKKKKKKHMKN 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,223,065
Number of Sequences: 37544
Number of extensions: 149275
Number of successful extensions: 476
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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