Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I05
(158 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 25 1.8
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 23 5.4
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 23 5.4
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 23 5.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 23 5.4
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 23 7.2
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 23 7.2
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 23 7.2
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 22 9.5
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 22 9.5
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 22 9.5
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 32 MAVRALLILAMVVCIGHVHSKSLLNLSCKRIRDFVNG 142
MAV ++ +V+ ++ K LL+ CK + + + G
Sbjct: 91 MAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRG 127
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -2
Query: 94 LTMDVSNTYDHCQNKKRAYGHCSVV 20
L D + C N R YGH S++
Sbjct: 316 LETDSPDMITECLNAVRKYGHVSII 340
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 50 LILAMVVCIGHVHSKSLLNLSCKRIR 127
L+ A+ V + H K +L+ +CKR R
Sbjct: 88 LVDAVFVSESNHHEKEILHRTCKRYR 113
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 74 IGHV-HSKSLLNLSCKRIRDFVNGHNYR 154
I H+ H KS L+ ++ +N HN+R
Sbjct: 64 IAHIDHGKSTLSDCILKLTGVINEHNFR 91
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 144 CPLTKSLIRLHDKFSRDLLWT 82
CP ++ L +F RD LW+
Sbjct: 1352 CPGSRQFTVLQSRFQRDHLWS 1372
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 56 LAMVVCIGHVHSKSLLNLSCKRIRDFVNGHN 148
L+++V I H +S L K I+DF N H+
Sbjct: 872 LSILVLIVRQHIRSFLPDLFKLIKDFWNPHS 902
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -3
Query: 129 SLIRLHDKFSRDLLWTCPIHTTIAKIRSARTAIVQLYVP 13
+LI + D+L P T K R A +VQ Y P
Sbjct: 646 TLIVMTSNLGSDILVADPSTTVTPKSRDAVMDVVQKYYP 684
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/27 (25%), Positives = 11/27 (40%)
Frame = +1
Query: 4 YRSWYIQLNNGRTRASYFGNGRMYWTR 84
+ WY + NG S G +W +
Sbjct: 573 FEKWYTRYANGSPICSEMGKKEFFWRK 599
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 52 YFGNGRMYWTRP 87
YFG G YW P
Sbjct: 712 YFGTGENYWRGP 723
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 122 IRDFVNGHNY 151
IR++VNGH Y
Sbjct: 679 IREYVNGHGY 688
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 70 YDHCQNKKRAYGHCSVV 20
Y H QN ++ +G CS V
Sbjct: 1248 YAHSQNAEKIFGICSKV 1264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 695,644
Number of Sequences: 5004
Number of extensions: 9677
Number of successful extensions: 31
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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