Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I05
         (158 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-8|AAK18853.4|  492|Caenorhabditis elegans Regulator of g ...    27   2.4  
U43282-6|AAA83617.1|  249|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical...    25   7.2  

>U32305-8|AAK18853.4|  492|Caenorhabditis elegans Regulator of g
           protein signalingprotein 5 protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 135 TKSLIRLHDKFSRDLLWTCPIHTTIAKIRSARTAIVQLYVPRTI 4
           T    RLHDK+  D L T   H  + +++S     V+L  PR +
Sbjct: 313 TACFFRLHDKYLSDFLKTSYYHNYLGELQSFIDFTVEL--PRKV 354


>U43282-6|AAA83617.1|  249|Caenorhabditis elegans Hypothetical
           protein T22E5.6 protein.
          Length = 249

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 5   IVRGTYN*TMAVRALLILAMVVCIGHVHSKSLLNLSCKR 121
           +VR T++  + + A  I  +   IGH  S+S   L+ KR
Sbjct: 99  VVRVTFHIALVILAFQIFYLAYTIGHCCSQSFTELTKKR 137


>AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.5 protein.
          Length = 121

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 114 HDKFSRDLLWTCPIHTTIAKIRSAR 40
           H+   +DLLW  P      ++R  R
Sbjct: 40  HESVKKDLLWAAPYDARFPQVRKQR 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,820,558
Number of Sequences: 27780
Number of extensions: 54570
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 12,740,198
effective HSP length: 33
effective length of database: 11,823,458
effective search space used: 224645702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)