Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I05
         (158 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   1.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   1.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   2.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   2.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   2.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   3.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   7.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    18   9.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 5   IVRGTYN*TMAVRALLILAMVVCIGHV 85
           ++ G Y+ ++ V A  IL   +C GHV
Sbjct: 765 LLSGHYDSSVDVYAFGILFWYLCAGHV 791


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 5   IVRGTYN*TMAVRALLILAMVVCIGHV 85
           ++ G Y+ ++ V A  IL   +C GHV
Sbjct: 803 LLSGHYDSSVDVYAFGILFWYLCAGHV 829


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 108 KFSRDLLWTCPIHTT 64
           +F RDL+WT  ++ +
Sbjct: 91  QFVRDLIWTPTVYVS 105


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 95  SLLNLSCKRIRDFVNGHNYRR 157
           S L+ SC    ++ N +NY++
Sbjct: 305 SSLSNSCNYSNNYYNNNNYKK 325


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = +2

Query: 41  RALLILAMVVCIGHVHSKSLLNLSCKRIRDFVNGHNY 151
           RA + +    C G V  +      CK  + F +G  Y
Sbjct: 399 RAFVRILCACCPGRVRRRYQPAFRCKPSQRFASGRYY 435


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 74  IGHVHSKSLLNLSCKRIRDFVNG 142
           +G      +L++  + +RDF+NG
Sbjct: 77  VGQYGYDRVLSVLGRHVRDFLNG 99


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/14 (35%), Positives = 7/14 (50%)
 Frame = +3

Query: 18  HTTEQWPYARFLFW 59
           H   +W    FL+W
Sbjct: 326 HEMSEWVKVVFLYW 339


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 91  TMDVSNTYDHCQNKKRAY 38
           T+  +N Y++  NKK  Y
Sbjct: 311 TIHNNNNYNNYNNKKLYY 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,315
Number of Sequences: 438
Number of extensions: 657
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 32
effective length of database: 132,327
effective search space used:  2646540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)