Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_I04
(303 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 110 4e-26
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 110 4e-26
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 0.61
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 1.4
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 3.2
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 3.2
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 3.2
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 24 4.3
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 24 4.3
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 24 5.6
SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 7.5
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 23 7.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 23 9.9
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 23 9.9
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 23 9.9
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 23 9.9
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 23 9.9
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 110 bits (265), Expect = 4e-26
Identities = 51/89 (57%), Positives = 62/89 (69%)
Frame = +1
Query: 37 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 216
MGAY+Y++EL +KK SDV FL R+R W+YRQ+ +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 217 IFRIXXXXXXXXXXXXXXATYGKPKSHGV 303
I+RI TYGKP GV
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGV 89
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 110 bits (265), Expect = 4e-26
Identities = 51/89 (57%), Positives = 62/89 (69%)
Frame = +1
Query: 37 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 216
MGAY+Y++EL +KK SDV FL R+R W+YRQ+ +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 217 IFRIXXXXXXXXXXXXXXATYGKPKSHGV 303
I+RI TYGKP GV
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGV 89
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.1 bits (57), Expect = 0.61
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 123 LPHSYTQEKSHNIAQLFPIQLLYISVRAH 37
LPHS EKS N+ Q +QL ++++ H
Sbjct: 761 LPHSCEMEKSLNVLQHKVLQLQAVNMKLH 789
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 1.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 141 TSQLAILPHSYTQEKSHNIAQLFPIQLL 58
+SQL L H+Y +EKS N L IQ L
Sbjct: 433 SSQLEHLKHNYEEEKSMNENLLVRIQTL 460
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 24.6 bits (51), Expect = 3.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 2 HEAEGSITDSSRWARTD 52
+ AE +TD SRW R D
Sbjct: 401 YTAETELTDKSRWTRLD 417
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 24.6 bits (51), Expect = 3.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 103 LRIRVWQYRQLTRMHRAPRPTRPD 174
L+ +W Y L R++ PR PD
Sbjct: 280 LKETMWDYLNLVRVYTRPRGLEPD 303
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 24.6 bits (51), Expect = 3.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 182 EGLDTVPSKVMLSSESACAVVAVNAQCP 265
E L+ +P KV++ CAV V P
Sbjct: 841 EKLEDIPGKVVVFERKICAVYPVEGSSP 868
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 24.2 bits (50), Expect = 4.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 291 LGFAVGSSLGHWA 253
LG +GS+ GHWA
Sbjct: 299 LGLNIGSTTGHWA 311
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 24.2 bits (50), Expect = 4.3
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = -1
Query: 246 ATTAHADSEDNITLLGTVSKPSRLVWPRGPGSAVHTSQLAILPHSYTQEKSHNIA-QLFP 70
A+T + N+ + G S P W SAV ++ S N + P
Sbjct: 771 ASTVSRNPFHNLKISGA-SSPVSNFWESEFASAVFPRSISKTTSLSVNNSSVNPSLDSEP 829
Query: 69 IQLLYISVRAHLDESVIDPSAS 4
+QL + H D SV+D S S
Sbjct: 830 VQLSNMEEPQHQDSSVVDVSTS 851
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 23.8 bits (49), Expect = 5.6
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 179 REGLDTVPSKVMLSSESACAVVAVNAQCPRELPTANPRAMV 301
R G T P+KV L E + N Q P +NP MV
Sbjct: 648 RNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSNPARMV 688
>SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 240 TAHADSEDNITLLGTVSKPSRLV 172
TA ADS D+ + T+ KPS +
Sbjct: 190 TASADSSDSSSASSTIFKPSYFI 212
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 152 LPGPRGQTRREGLDTVPSKVMLSSESACA 238
LP P+G+ +R+G + +K++ S E A
Sbjct: 10 LPQPQGKHQRKGKKQLENKILHSYEEESA 38
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 23.0 bits (47), Expect = 9.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 210 LCYLQNPR 233
LCYLQNPR
Sbjct: 2920 LCYLQNPR 2927
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 81 ERCYAISLAYKSVAISPVDSYAPRSQAHEAR 173
ER YA++ ++ + VDS+A R H R
Sbjct: 196 ERFYAVASVLNNMVMQLVDSFAFRLLKHVIR 226
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 142 MHRAPRPTRPDKARRLGYRAKQGYV 216
M A R T PD RL R K+G +
Sbjct: 1073 MEPASRETSPDSEGRLTIRKKKGCI 1097
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 23.0 bits (47), Expect = 9.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 103 LRIRVWQYRQLTRMHRAPRPTRPD 174
LR+ W +R+ + P+P +PD
Sbjct: 272 LRLPSWAHREDKKRSSKPQPLQPD 295
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 23.0 bits (47), Expect = 9.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 291 LGFAVGSSLGHWA 253
+G +GS+ GHWA
Sbjct: 299 VGLNIGSTTGHWA 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,371
Number of Sequences: 5004
Number of extensions: 22301
Number of successful extensions: 65
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -