Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I04
         (303 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   126   3e-30
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   2.6  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical p...    26   4.5  
Z82053-10|CAB04838.2|  278|Caenorhabditis elegans Hypothetical p...    26   6.0  
Z81543-1|CAB04423.2|  543|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z73422-3|CAA97766.1|  523|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  126 bits (304), Expect = 3e-30
 Identities = 54/89 (60%), Positives = 68/89 (76%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 216
           MGAY+Y+QE++RKK SD +R+LLRIR W YRQL+ +HR PRPTRP+KARRLGYRAKQG+V
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 217 IFRIXXXXXXXXXXXXXXATYGKPKSHGV 303
           ++R+               TYGKPK+HGV
Sbjct: 61  VYRVRVRRGNRKRPVCKGQTYGKPKTHGV 89


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 61  ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 159
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 61  ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 159
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


>Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical
           protein T19B10.3 protein.
          Length = 653

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 202 WHGIQAFSPCLASWAWERGAYESTGDIAT 116
           W+G +  +PC+ S+ ++    ES GD+ T
Sbjct: 332 WNGAETEAPCITSYDYDAPISES-GDVTT 359


>Z82053-10|CAB04838.2|  278|Caenorhabditis elegans Hypothetical
           protein T26E3.8 protein.
          Length = 278

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 255 AFTATTAHADSEDNITLLGTVSKPSRLV 172
           A +A TAH  + D  TLL T     RLV
Sbjct: 16  ALSAVTAHLKTMDIFTLLATSKNAQRLV 43


>Z81543-1|CAB04423.2|  543|Caenorhabditis elegans Hypothetical
           protein F49B2.1 protein.
          Length = 543

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -1

Query: 153 SAVHTSQLAILPHSYTQEKSHNIAQL--FPIQLLYISVRAHLDESVI 19
           +A+H   + ++  S+T E + N+A+   FP+  + +++RA+    VI
Sbjct: 16  AALHMKFIDLIRFSFTCETAKNLAETFNFPVTGIRMAIRANFRLDVI 62


>Z73422-3|CAA97766.1|  523|Caenorhabditis elegans Hypothetical
           protein B0564.4 protein.
          Length = 523

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 132 VDSYAPRSQAHEARQGEKAWIPCQARLCYLQNPR 233
           +D Y   +  + +R G+K WIP    LC     R
Sbjct: 168 LDLYNSYTTKNNSRLGKKYWIPANWALCMTYKAR 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,998,369
Number of Sequences: 27780
Number of extensions: 129431
Number of successful extensions: 432
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)