Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I02
         (213 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936...    30   0.22 
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055...    30   0.29 
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529...    26   4.8  
06_03_1225 + 28538515-28538721,28538799-28539000,28539241-285394...    25   8.3  

>09_03_0118 -
           12492206-12492415,12492746-12492816,12493611-12493634,
           12494061-12494114,12494803-12496345
          Length = 633

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = -2

Query: 194 PDSLLVFKSSLNTPR**PLLKTSLAFFPRSA*YGGAMPEVY 72
           PDSLLV  +SL   R  PLL++ L+  P SA   G  P ++
Sbjct: 122 PDSLLVLANSLAGARLFPLLRSLLSDLPPSALSRGLFPLLF 162


>01_05_0521 -
           22904656-22904962,22905132-22905340,22905432-22905521,
           22905624-22905734,22906401-22906468,22906611-22906653
          Length = 275

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 85  MAPPYYADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTS 210
           MAP  Y D+GKK  D+  + Y     K  L T +  GV  T+
Sbjct: 1   MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITA 41


>03_02_0054 +
           5292167-5292336,5292434-5292526,5292828-5293003,
           5293076-5293122,5293732-5293801,5293960-5294186,
           5294274-5294327,5294470-5294545,5294679-5294884
          Length = 372

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 52  QFYLRIK*TSGMAPPYYADLGKKANDVFSKGYHLGVFKLDLKTK 183
           +FYLR+K  +G     Y +L  + NDV         F L+L  K
Sbjct: 246 KFYLRLKRRNGRVKHLYEELHVEGNDVRFVSAPSVQFNLELSEK 289


>06_03_1225 +
           28538515-28538721,28538799-28539000,28539241-28539472,
           28539560-28539713,28539792-28540136
          Length = 379

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 19  SAICLKFTIIKQFYLRIK*TSGMAPPYYADLGKKA--NDVFSKG 144
           SA+ L   + ++   R+  TSG   P YA  G+ +   DVFS G
Sbjct: 194 SAVTLVSDVAEECTRRVVGTSGYIAPEYASEGRYSLKTDVFSFG 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,213,242
Number of Sequences: 37544
Number of extensions: 78090
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)