Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_I02
         (213 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...    49   4e-07
U23168-9|AAC38805.1|  196|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF067950-2|AAG24155.2|  365|Caenorhabditis elegans Serpentine re...    25   7.3  
U39648-2|AAM15606.1|  166|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
 Frame = +1

Query: 85  MAPPYYADLGKKANDVFSKGYHLGVFKLDLKTKS--ESGVEFTS 210
           MAPP +ADLGK A D+F+KGY+ G  K+D  T++     VEF S
Sbjct: 1   MAPPTFADLGKSAKDLFNKGYNFGFLKIDSTTRAGDNKEVEFKS 44


>U23168-9|AAC38805.1|  196|Caenorhabditis elegans Hypothetical
           protein B0228.1 protein.
          Length = 196

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 109 LGKKANDVFSKGYHLGVFKLD 171
           L  K  D+F K YH  +FKLD
Sbjct: 159 LTPKEYDIFRKHYHPHIFKLD 179


>AF067950-2|AAG24155.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein143 protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 104 LILERKPMMSSAKAIILVYLSL 169
           LIL RKP+ SS+  II+ ++S+
Sbjct: 56  LILIRKPLRSSSINIIMAFISI 77


>U39648-2|AAM15606.1|  166|Caenorhabditis elegans Hypothetical
           protein T13C5.7 protein.
          Length = 166

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +1

Query: 76  TSGMAPPYYADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSG 213
           T+   PP+  ++ +K  D    G+ +        T +E+G+E+  G
Sbjct: 43  TTVTEPPFPCNVCQKVYDPACMGFGIPTLLTGCPTAAEAGIEYALG 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,544,548
Number of Sequences: 27780
Number of extensions: 70716
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)