Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H24
         (173 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   0.76 
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   0.76 
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    25   1.0  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    23   4.1  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   4.1  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    23   5.4  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    23   7.1  
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom...    22   9.4  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    22   9.4  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 145  RTFTSLPCSLVFSRVTAWC 89
            R  T  PC+L ++ +T WC
Sbjct: 2490 RMLTKKPCALNYTNLTKWC 2508


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 172 YDIPYTLPSRTFTSLPCSLVFSRVTAWCIRTVYYNQ 65
           Y  P      T + LP S ++S ++   +RT++YN+
Sbjct: 805 YSDPNDPTKATHSVLPWSAMWSIISTQSVRTMFYNE 840


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 172 YDIPYTLPSRTFTSLPCSLVFSRVT 98
           Y+I Y L  R  + +PC+ +F+R +
Sbjct: 51  YNIVYDLLDRVISHVPCTYLFARTS 75


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 169 DIPYTLPSRTFTSLPCS 119
           D  +  PS++ +SLPCS
Sbjct: 95  DFKFKFPSKSASSLPCS 111


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 134 FTALFISLLTSYSMVHKNS 78
           F  LF+ L+  YS+ H NS
Sbjct: 242 FRTLFLLLIRDYSLFHGNS 260


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -2

Query: 106  RVTAWCIRTVYYNQKT*QSCQ*YHCSSLKAS 14
            RV AWC R  Y       S + Y    LKAS
Sbjct: 1082 RVPAWCDRICYRGSPDYISAENYTRYELKAS 1112


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 172 YDIPYTLPSRTFTSLPCSLVFSRVTAWCIRTVYYN 68
           Y +P TLP +  +SL   L+        +RT + N
Sbjct: 336 YIVPKTLPIKPLSSLLFVLISFTCIGLYVRTAFQN 370


>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 63  FWL*YTVLMHHAVTREKTNEQ 125
           FWL  T+L  + + REKT ++
Sbjct: 114 FWLLDTLLTIYQLLREKTEDE 134


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 84  EQCIITRRHNNLVN 43
           +QCI   RHN L+N
Sbjct: 800 QQCIDLSRHNTLLN 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,086
Number of Sequences: 5004
Number of extensions: 7869
Number of successful extensions: 36
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 38
effective length of database: 2,172,326
effective search space used: 41274194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)