Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H24
         (173 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93016-3|CAB07507.2|  526|Homo sapiens potassium voltage-gated c...    28   6.2  
BC132959-1|AAI32960.1|  526|Homo sapiens KCNS1 protein protein.        28   6.2  
BC132957-1|AAI32958.1|  526|Homo sapiens KCNS1 protein protein.        28   6.2  
BC075034-1|AAH75034.2|  526|Homo sapiens potassium voltage-gated...    28   6.2  
BC075033-1|AAH75033.2|  526|Homo sapiens potassium voltage-gated...    28   6.2  
AF043473-1|AAC13165.2|  526|Homo sapiens delayed-rectifier K+ ch...    28   6.2  

>Z93016-3|CAB07507.2|  526|Homo sapiens potassium voltage-gated
           channel, delayed-rectifier, subfamily S, member 1
           protein.
          Length = 526

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 160 YTLPSRTFTSLPCSLVFSRVTAWCIRTV 77
           Y+LPS+ F+ +  S+V + + A CI ++
Sbjct: 215 YSLPSKLFSCVSISVVLASIAAMCIHSL 242


>BC132959-1|AAI32960.1|  526|Homo sapiens KCNS1 protein protein.
          Length = 526

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 160 YTLPSRTFTSLPCSLVFSRVTAWCIRTV 77
           Y+LPS+ F+ +  S+V + + A CI ++
Sbjct: 215 YSLPSKLFSCVSISVVLASIAAMCIHSL 242


>BC132957-1|AAI32958.1|  526|Homo sapiens KCNS1 protein protein.
          Length = 526

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 160 YTLPSRTFTSLPCSLVFSRVTAWCIRTV 77
           Y+LPS+ F+ +  S+V + + A CI ++
Sbjct: 215 YSLPSKLFSCVSISVVLASIAAMCIHSL 242


>BC075034-1|AAH75034.2|  526|Homo sapiens potassium voltage-gated
           channel, delayed-rectifier, subfamily S, member 1
           protein.
          Length = 526

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 160 YTLPSRTFTSLPCSLVFSRVTAWCIRTV 77
           Y+LPS+ F+ +  S+V + + A CI ++
Sbjct: 215 YSLPSKLFSCVSISVVLASIAAMCIHSL 242


>BC075033-1|AAH75033.2|  526|Homo sapiens potassium voltage-gated
           channel, delayed-rectifier, subfamily S, member 1
           protein.
          Length = 526

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 160 YTLPSRTFTSLPCSLVFSRVTAWCIRTV 77
           Y+LPS+ F+ +  S+V + + A CI ++
Sbjct: 215 YSLPSKLFSCVSISVVLASIAAMCIHSL 242


>AF043473-1|AAC13165.2|  526|Homo sapiens delayed-rectifier K+
           channel alpha subunit protein.
          Length = 526

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 160 YTLPSRTFTSLPCSLVFSRVTAWCIRTV 77
           Y+LPS+ F+ +  S+V + + A CI ++
Sbjct: 215 YSLPSKLFSCVSISVVLASIAAMCIHSL 242


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,554,449
Number of Sequences: 237096
Number of extensions: 291611
Number of successful extensions: 341
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 76,859,062
effective HSP length: 37
effective length of database: 68,086,510
effective search space used: 1361730200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)