Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H24
         (173 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       25   9.5  
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    25   9.5  
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :...    25   9.5  
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    25   9.5  

>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 169 DIPYTLPSRTFTSLPCSLVFSRVTAWCIRTVYYNQKT 59
           D  + LPS++FT+     +F ++  W + ++   QKT
Sbjct: 207 DHMFDLPSKSFTNSTKDALFQKIKLWLL-SIEPRQKT 242


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
           protein.
          Length = 1475

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 169 DIPYTLPSRTFTSLPCSLVFSRVTAWCIRTVYYNQKT 59
           D  + LPS++FT+     +F ++  W + ++   QKT
Sbjct: 207 DHMFDLPSKSFTNSTKDALFQKIKLWLL-SIEPRQKT 242


>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
           animals transformedinto males protein 2, isoform b
           protein.
          Length = 1147

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 169 DIPYTLPSRTFTSLPCSLVFSRVTAWCIRTVYYNQKT 59
           D  + LPS++FT+     +F ++  W + ++   QKT
Sbjct: 207 DHMFDLPSKSFTNSTKDALFQKIKLWLL-SIEPRQKT 242


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
           animals transformedinto males protein 2, isoform a
           protein.
          Length = 1475

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 169 DIPYTLPSRTFTSLPCSLVFSRVTAWCIRTVYYNQKT 59
           D  + LPS++FT+     +F ++  W + ++   QKT
Sbjct: 207 DHMFDLPSKSFTNSTKDALFQKIKLWLL-SIEPRQKT 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,412,425
Number of Sequences: 27780
Number of extensions: 44420
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 12,740,198
effective HSP length: 38
effective length of database: 11,684,558
effective search space used: 222006602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)