Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H24
         (173 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   3.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    19   4.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   4.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   7.3  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 31  YNDTIDKIVMSSGYNTLF 84
           YND  +  ++   YNT F
Sbjct: 229 YNDDANVYILPDPYNTKF 246


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 78  CIITRRHNNL 49
           C+I  RH NL
Sbjct: 223 CVIASRHRNL 232


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 139 FTSLPCSLVFSRVTAWCIRTVY 74
           F +LP  L F  V A    TVY
Sbjct: 144 FATLPLRLSFCVVLACSTATVY 165


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +2

Query: 77  HCSYAPCCN 103
           H  Y PCC+
Sbjct: 211 HKKYYPCCD 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,069
Number of Sequences: 438
Number of extensions: 571
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 37
effective length of database: 130,137
effective search space used:  2602740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)