Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H23
         (190 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      28   0.19 
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    24   3.0  
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    24   3.0  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    23   5.3  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    23   5.3  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    23   7.0  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    23   7.0  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    22   9.3  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 80  LPRAFHFYLVDKNVPKNLTPIINTVHTI 163
           LP  FHF L D    KNL  +I  +H +
Sbjct: 116 LPEIFHFELTDIYEGKNLPKVIYCIHAL 143


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 86  WVIFRSFKWNFFVNVQSVFL 27
           W IF++F W F  ++   F+
Sbjct: 408 WAIFQAFVWRFLHSIIHAFI 427


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 33  NRLYVNKKVPFE*TKYYPGHFIFI**TKTCQKI*LRSSILSIPYHSSFKERI 188
           +RL+          K+ P H ++       Q    R+S L +P  S+FKER+
Sbjct: 30  SRLFCKSSTSSATRKHDPFHKLWDRLQPKAQSTIQRTSSLPVPSSSNFKERL 81


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 27  EKNRLYVNKKVPFE*TKYYP 86
           + N  YV K VP+  TKY P
Sbjct: 468 KSNIFYVLKDVPWSITKYLP 487


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 113 CLLNKNEMPWVIFRSFK 63
           C+  K  +PW+ +R+F+
Sbjct: 133 CIKQKKILPWINYRTFQ 149


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 649

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 14 NITYGEKQIVR*QKSSI*MNEIL 82
          ++ YGEK  VR   S +  NEIL
Sbjct: 27 HVGYGEKDPVRGNDSFVSFNEIL 49


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 74  EILPRAFHFYLVDKNVPKNLTPIINT 151
           E +PR  H    D+N+P+  +  +N+
Sbjct: 62  EKIPRVIHQLWKDENIPERWSNTVNS 87


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 106 SRQKRAKKFNSDHQYCPYH 162
           +R+++ + +  D Q CP+H
Sbjct: 210 NRKRKRQAYELDSQSCPWH 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 864,620
Number of Sequences: 5004
Number of extensions: 14439
Number of successful extensions: 38
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)