Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H23
         (190 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0373 + 16397003-16397015,16397742-16398091,16423530-164238...    26   4.9  
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139...    25   6.4  
09_06_0011 + 20217882-20217989,20218085-20218272,20218355-202184...    25   8.5  
08_02_1125 + 24488073-24488244,24488358-24488398,24488621-244888...    25   8.5  
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    25   8.5  
01_05_0151 + 18618340-18618419,18619756-18620116                       25   8.5  

>08_02_0373 +
           16397003-16397015,16397742-16398091,16423530-16423829,
           16423908-16424354,16424441-16425046,16425140-16425327,
           16425406-16425576,16425659-16425702,16425763-16425947,
           16426033-16426071,16426282-16426332
          Length = 797

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 91  ISFLFSRQKRAKKFNSDHQYCPY 159
           I+F+ + ++  K+ NSD+  CPY
Sbjct: 28  INFMNAEEEDRKRRNSDYMCCPY 50


>06_03_1501 +
           30612643-30613310,30613396-30613501,30613732-30613934,
           30614211-30614502
          Length = 422

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +1

Query: 19  YVWRKTDCTLTKKFHLNERNITQGISFLFSRQKRAKKFNSDHQYCPYHTI 168
           Y+W   D  +    H   + +   + +L SRQK  K++   +    YH +
Sbjct: 121 YLWHLPDPKVCGDSHGKSQTVVVLLGWLGSRQKHLKRYADWYTSRGYHAV 170


>09_06_0011 +
           20217882-20217989,20218085-20218272,20218355-20218421,
           20218464-20218538,20219100-20219152,20219661-20219715,
           20219812-20219886,20220495-20220612,20220720-20220766,
           20220853-20220954
          Length = 295

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +1

Query: 7   GLKHYVWRKTDCTLTKKFHLNERNITQGISFLFSRQKRAKKFNSDHQYCPY 159
           G + Y  +K++    K  +        G    F  ++R K  + DH+Y PY
Sbjct: 238 GKRPYYLKKSEIRERKLMNKYNELKEAGKLDAFMEKRRRKNASKDHRYMPY 288


>08_02_1125 +
           24488073-24488244,24488358-24488398,24488621-24488889,
           24489061-24489157,24489407-24489753,24489816-24490173,
           24490319-24490894,24491374-24491649
          Length = 711

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 73  RNITQGISFLFSRQKRAKKFNSDHQYCPYHTIAVS 177
           R+I Q +S   + ++  KK+   H+Y  + T+ +S
Sbjct: 266 RDIQQALSGATNDKQLPKKYYLSHRYTKFFTVGIS 300


>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
            725738-725840,726106-726264,726728-726846,726891-727004,
            727119-727277,727404-727451,728464-728640,729064-729116,
            729549-729661,729793-729873,729966-730081,730786-730905,
            732321-732429,732593-732770,732852-732920,733102-733233,
            733657-733766,733843-734003,734081-734171,734258-734355,
            734499-734619,734732-734892,734985-735090,735142-735236,
            735828-735852,736008-736084,736196-736282,736372-736421,
            736558-736639,736735-736795,737064-737116,737206-737395,
            737472-737595,737860-737962,738064-738156,740344-740422,
            740508-740584,740915-741043,742614-742731,742816-742913,
            743457-743546,744998-745123,745238-745351,745488-745611,
            745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 168  YGMVWTVLMIGVKFFGTFLSTK*K*NALGN-ISFIQ 64
            YG  W VL++ V  F  F +T  K  AL   + F+Q
Sbjct: 1772 YGFSWIVLLVLVLLFKLFTATPKKSTALPTFVRFLQ 1807


>01_05_0151 + 18618340-18618419,18619756-18620116
          Length = 146

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 28  RKTDCTLTKK-FHLNERNITQGISFLFSRQKRAKKFNSDH 144
           R+ D T  ++  +L+  N+ QG+S  FS     + F  DH
Sbjct: 105 REKDLTAGRQNVNLDPENMAQGLSSRFSSGAVQRNFKDDH 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,881,558
Number of Sequences: 37544
Number of extensions: 70888
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)