Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_H23
         (190 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   2.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   2.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   3.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          19   7.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    19   7.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    18   9.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    18   9.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    18   9.5  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +1

Query: 34  TDCTLTKKFHLNERNITQGISFLFSRQKRAKKFNSDHQ 147
           +D T  KK+          + F+    +R  +FN++ Q
Sbjct: 439 SDVTPRKKYPFELEKALHNVMFIQHHIQRQDEFNAEDQ 476


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 7   GLKHYVWRKTDCTLTKKF 60
           G   Y+W  T  T+++KF
Sbjct: 545 GYMIYIWFTTSGTISEKF 562


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 7   GLKHYVWRKTDCTLTKKF 60
           G   Y+W  T  T+++KF
Sbjct: 598 GYMIYIWFTTSGTISEKF 615


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 188 DSLLETAMVWYGQY 147
           DS +  A VW GQY
Sbjct: 62  DSNVLAAKVWNGQY 75


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 13 KHYVWRKTDCTLTKKFHLNE 72
          KH   R   C L KK + N+
Sbjct: 3  KHLTQRINSCDLLKKRNEND 22


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 13  KHYVWRKTDCTLTKKFHLNE 72
           KH   R   C L KK + N+
Sbjct: 124 KHLTQRINSCDLLKKRNEND 143


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -3

Query: 86  WVIFRSFKWNFFV 48
           W I   F WN +V
Sbjct: 182 WTIAPMFGWNRYV 194


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 154

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -3

Query: 86 WVIFRSFKWNFFV 48
          W I   F WN +V
Sbjct: 58 WTIAPMFGWNRYV 70


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 190 RIRSLKLLWYGMDSIDDRS 134
           R R+  LL   +DS+DDR+
Sbjct: 285 RQRNEILLSDELDSVDDRT 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,682
Number of Sequences: 438
Number of extensions: 931
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 42
effective length of database: 127,947
effective search space used:  2558940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)